modify dumped code doesn't work as expected for some file

[await-ovo]

Describe the bug

after change dumped code in .vite-node/dump, and re-run vite-node, you can see that some file changes take effect and some do not.

Reproduction

Here is a repo to reproduce: https://github.com/await-ovo/reproduce-vite-node-load-dumpped-modules-issue

steps to reproduce:

Steps to Reproduce

1. git clone git@github.com:await-ovo/reproduce-vite-node-load-dumpped-modules-issue.git
2. cd reproduce-vite-node-load-dumpped-modules-issue
3. pnpm install
4. node ./index.mjs
5. modify dumpped code in .vite-node/dump/_@fs_xxxxx_reproduce-vite-node-load-dumpped-modules-issue_src_index_tsx--xxxxx.js:

6. modify dumpped code in .vite-node/dump/_src_App_tsx--xxxx.js:

7. node ./index.mjs then you can see that only the change of .vite-node/dump/_src_App_tsx--xxxx.js take effect:

System Info

System:
    OS: macOS 11.6.8
    CPU: (12) x64 Intel(R) Core(TM) i7-9750H CPU @ 2.60GHz
    Memory: 2.21 GB / 16.00 GB
    Shell: 5.8 - /bin/zsh
  Binaries:
    Node: 16.15.1 - ~/.nvm/versions/node/v16.15.1/bin/node
    Yarn: 1.22.19 - ~/Library/pnpm/yarn
    npm: 8.11.0 - ~/.nvm/versions/node/v16.15.1/bin/npm
  Browsers:
    Chrome: 105.0.5195.125
    Safari: 15.6.1
  npmPackages:
    vite: ^3.1.4 => 3.1.0
    vitest: workspace:* => 0.24.0

Used Package Manager

pnpm

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