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Multiple long read files in the latest version #24

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xie186 opened this issue Dec 13, 2020 · 0 comments
Open

Multiple long read files in the latest version #24

xie186 opened this issue Dec 13, 2020 · 0 comments

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@xie186
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xie186 commented Dec 13, 2020

Hi , It seems that the latest version of haslr allows the user to provide multiple fastq files as input based on the code here:

parser_req.add_argument('-l', '--long', type=str, help='long read file', nargs='+')
. This is not allowed in https://github.com/vpc-ccg/haslr/releases/tag/v0.8a1

Could you please update the bioconda version: https://anaconda.org/bioconda/haslr? As of today, it's v0.8a1.
Could you please also let me know that whether gzipped fastq files are allowed? I didn't get this information from the help message. Thanks in advance!

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