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From: <Saved by Blink>
Snapshot-Content-Location: https://reviewer.pullrequest.com/review/e6cb0db2-0b85-48f7-aa2d-4da416232fe4/reportgen
Subject: PullRequest | Reviewer
Date: Fri, 20 Jan 2023 16:50:58 -0000
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le=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0p=
x; white-space: pre-wrap; word-break: break-word;"> </code><code class=3D"s=
tyles_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inli=
ne; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-wor=
d;">pkg</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color:=
rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-spa=
ce: pre-wrap; word-break: break-word;">.</code><code class=3D"styles_preren=
deredCode__g5TqW" style=3D"color: rgb(92, 38, 153); display: inline; paddin=
g: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">packag=
eDest</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: r=
gba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space=
: pre-wrap; word-break: break-word;">().</code><code class=3D"styles_preren=
deredCode__g5TqW" style=3D"color: rgb(92, 38, 153); display: inline; paddin=
g: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">toStri=
ng</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba=
(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: p=
re-wrap; word-break: break-word;">()</code></div></div></div></div></div><d=
iv><div style=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY=
styles_codeLineContainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-g=
sDKAQ bylYDD styles_lineColumn__3loWi" data-test=3D"div-atom">47</div><span=
class=3D"styles_spacer__zrrtx"></span><div data-test=3D"div-atom" class=3D=
"sc-gsDKAQ eZkJGz"><div><code class=3D"styles_prerenderedCode__g5TqW" style=
=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px;=
white-space: pre-wrap; word-break: break-word;"> </code><code class=
=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(170, 13, 145); displ=
ay: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: b=
reak-word;">def</code><code class=3D"styles_prerenderedCode__g5TqW" style=
=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px;=
white-space: pre-wrap; word-break: break-word;"> </code><code class=3D"sty=
les_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline=
; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;=
">path</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: =
rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-spac=
e: pre-wrap; word-break: break-word;"> </code><code class=3D"styles_prerend=
eredCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padd=
ing: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">=3D<=
/code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0,=
0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-=
wrap; word-break: break-word;"> </code><code class=3D"styles_prerenderedCod=
e__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; ma=
rgin: 0px; white-space: pre-wrap; word-break: break-word;">Paths</code><cod=
e class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.8=
7); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word=
-break: break-word;">.</code><code class=3D"styles_prerenderedCode__g5TqW" =
style=3D"color: rgb(92, 38, 153); display: inline; padding: 0px; margin: 0p=
x; white-space: pre-wrap; word-break: break-word;">get</code><code class=3D=
"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); displa=
y: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: br=
eak-word;">(</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"c=
olor: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0px; white-spa=
ce: pre-wrap; word-break: break-word;">dir</code><code class=3D"styles_prer=
enderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; p=
adding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">,=
</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0=
, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre=
-wrap; word-break: break-word;"> </code><code class=3D"styles_prerenderedCo=
de__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; m=
argin: 0px; white-space: pre-wrap; word-break: break-word;">filename</code>=
<code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0,=
0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; =
word-break: break-word;">)</code></div></div></div></div></div><div><div st=
yle=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_co=
deLineContainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylY=
DD styles_lineColumn__3loWi" data-test=3D"div-atom">48</div><span class=3D"=
styles_spacer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ=
eZkJGz"><div><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color:=
rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-spa=
ce: pre-wrap; word-break: break-word;"> </code><code class=3D"styles=
_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inli=
ne; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-wor=
d;">//log.debug "QuiltObserver.writeString[$path]: $text"</code></div></div=
></div></div></div></div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ eWA=
XPi"><div data-test=3D"div-atom" class=3D"sc-gsDKAQ kTKCSa"><div class=3D"s=
c-crHmcD fHGTZc" data-test=3D"flex-atom"><div class=3D"sc-bBHxTw hjGax MuiA=
vatar-root MuiAvatar-circular sc-giYglK jbfWGq" data-test=3D"avatar-atom"><=
img alt=3D"PR" src=3D"https://reviewer.pullrequest.com/static/media/pr-thum=
bnail.3df0bfe9e3b2ca092682.png" class=3D"sc-iwjdpV iAvrYI MuiAvatar-img"></=
div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ jrzSuB"><div class=3D"sc=
-crHmcD hZVEdg" data-test=3D"flex-atom"></div><div class=3D"jss6"><p>I woul=
d recommend cleaning up commented out code in this and other files to impro=
ve readability.</p></div></div></div></div></div><div class=3D"jss5"></div>=
</div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ jZaqvs" style=3D"break=
-before: page;"><div data-test=3D"code-path" class=3D"sc-gsDKAQ jCkGOp"><h4=
class=3D"sc-furwcr krnJxP text-atom" data-test=3D"h4-atom">plugins/nf-quil=
t/src/main/nextflow/quilt/QuiltObserver.groovy</h4></div><div><div><div sty=
le=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_cod=
eLineContainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYD=
D styles_lineColumn__3loWi" data-test=3D"div-atom">45</div><span class=3D"s=
tyles_spacer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ =
eZkJGz"><div><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: =
rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-spac=
e: pre-wrap; word-break: break-word;"> </code><code class=3D"styles_prer=
enderedCode__g5TqW" style=3D"color: rgb(170, 13, 145); display: inline; pad=
ding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">pub=
lic</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb=
a(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: =
pre-wrap; word-break: break-word;"> </code><code class=3D"styles_prerendere=
dCode__g5TqW" style=3D"color: rgb(170, 13, 145); display: inline; padding: =
0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">static</c=
ode><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0=
, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-wr=
ap; word-break: break-word;"> </code><code class=3D"styles_prerenderedCode_=
_g5TqW" style=3D"color: rgb(170, 13, 145); display: inline; padding: 0px; m=
argin: 0px; white-space: pre-wrap; word-break: break-word;">void</code><cod=
e class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.8=
7); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word=
-break: break-word;"> </code><code class=3D"styles_prerenderedCode__g5TqW" =
style=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0px;=
white-space: pre-wrap; word-break: break-word;">writeString</code><code cl=
ass=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); =
display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-bre=
ak: break-word;">(</code><code class=3D"styles_prerenderedCode__g5TqW" styl=
e=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0px; whi=
te-space: pre-wrap; word-break: break-word;">String</code><code class=3D"st=
yles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: =
inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break=
-word;"> </code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"colo=
r: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0px; white-space:=
pre-wrap; word-break: break-word;">text</code><code class=3D"styles_preren=
deredCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; pad=
ding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">,</=
code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, =
0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-w=
rap; word-break: break-word;"> </code><code class=3D"styles_prerenderedCode=
__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; mar=
gin: 0px; white-space: pre-wrap; word-break: break-word;">QuiltPackage</cod=
e><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, =
0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap=
; word-break: break-word;"> </code><code class=3D"styles_prerenderedCode__g=
5TqW" style=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; margin=
: 0px; white-space: pre-wrap; word-break: break-word;">pkg</code><code clas=
s=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); di=
splay: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break=
: break-word;">,</code><code class=3D"styles_prerenderedCode__g5TqW" style=
=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px;=
white-space: pre-wrap; word-break: break-word;"> </code><code class=3D"sty=
les_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline=
; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;=
">String</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color=
: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-sp=
ace: pre-wrap; word-break: break-word;"> </code><code class=3D"styles_prere=
nderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; padding=
: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">filenam=
e</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(=
0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pr=
e-wrap; word-break: break-word;">)</code><code class=3D"styles_prerenderedC=
ode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: =
0px; margin: 0px; white-space: pre-wrap; word-break: break-word;"> </code><=
code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, =
0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; w=
ord-break: break-word;">{</code></div></div></div></div></div><div><div sty=
le=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_cod=
eLineContainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYD=
D styles_lineColumn__3loWi" data-test=3D"div-atom">46</div><span class=3D"s=
tyles_spacer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ =
eZkJGz"><div><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: =
rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-spac=
e: pre-wrap; word-break: break-word;"> </code><code class=3D"styles_=
prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; pa=
dding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">St=
ring</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rg=
ba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space:=
pre-wrap; word-break: break-word;"> </code><code class=3D"styles_prerender=
edCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; padding: 0p=
x; margin: 0px; white-space: pre-wrap; word-break: break-word;">dir</code><=
code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, =
0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; w=
ord-break: break-word;"> </code><code class=3D"styles_prerenderedCode__g5Tq=
W" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; marg=
in: 0px; white-space: pre-wrap; word-break: break-word;">=3D</code><code cl=
ass=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); =
display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-bre=
ak: break-word;"> </code><code class=3D"styles_prerenderedCode__g5TqW" styl=
e=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0px; whi=
te-space: pre-wrap; word-break: break-word;">pkg</code><code class=3D"style=
s_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inl=
ine; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-wo=
rd;">.</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: =
rgb(92, 38, 153); display: inline; padding: 0px; margin: 0px; white-space: =
pre-wrap; word-break: break-word;">packageDest</code><code class=3D"styles_=
prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inlin=
e; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word=
;">().</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: =
rgb(92, 38, 153); display: inline; padding: 0px; margin: 0px; white-space: =
pre-wrap; word-break: break-word;">toString</code><code class=3D"styles_pre=
renderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; =
padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">=
()</code></div></div></div></div></div><div><div style=3D"width: 100%; heig=
ht: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qiprS" =
data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD styles_lineColumn__3l=
oWi" data-test=3D"div-atom">47</div><span class=3D"styles_spacer__zrrtx"></=
span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div><code clas=
s=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); di=
splay: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break=
: break-word;"> </code><code class=3D"styles_prerenderedCode__g5TqW"=
style=3D"color: rgb(170, 13, 145); display: inline; padding: 0px; margin: =
0px; white-space: pre-wrap; word-break: break-word;">def</code><code class=
=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); dis=
play: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break:=
break-word;"> </code><code class=3D"styles_prerenderedCode__g5TqW" style=
=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0px; whit=
e-space: pre-wrap; word-break: break-word;">path</code><code class=3D"style=
s_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inl=
ine; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-wo=
rd;"> </code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: =
rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-spac=
e: pre-wrap; word-break: break-word;">=3D</code><code class=3D"styles_prere=
nderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; pa=
dding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;"> <=
/code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(0, =
0, 136); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap;=
word-break: break-word;">Paths</code><code class=3D"styles_prerenderedCode=
__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px=
; margin: 0px; white-space: pre-wrap; word-break: break-word;">.</code><cod=
e class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(92, 38, 153);=
display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-br=
eak: break-word;">get</code><code class=3D"styles_prerenderedCode__g5TqW" s=
tyle=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: =
0px; white-space: pre-wrap; word-break: break-word;">(</code><code class=3D=
"styles_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: in=
line; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-w=
ord;">dir</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"colo=
r: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-s=
pace: pre-wrap; word-break: break-word;">,</code><code class=3D"styles_prer=
enderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; p=
adding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;"> =
</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(0,=
0, 136); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap=
; word-break: break-word;">filename</code><code class=3D"styles_prerendered=
Code__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding:=
0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">)</code>=
</div></div></div></div></div><div><div style=3D"width: 100%; height: 100%;=
"><div class=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qiprS" data-test=
=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD styles_lineColumn__3loWi" data=
-test=3D"div-atom">48</div><span class=3D"styles_spacer__zrrtx"></span><div=
data-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div><code class=3D"styl=
es_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: in=
line; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-w=
ord;"> </code><code class=3D"styles_prerenderedCode__g5TqW" style=3D=
"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; wh=
ite-space: pre-wrap; word-break: break-word;">//log.debug "QuiltObserver.wr=
iteString[$path]: $text"</code></div></div></div></div></div><div><div styl=
e=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_code=
LineContainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD=
styles_lineColumn__3loWi" data-test=3D"div-atom">49</div><span class=3D"st=
yles_spacer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ e=
ZkJGz"><div><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: r=
gba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space=
: pre-wrap; word-break: break-word;"> </code><code class=3D"styles_p=
rerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; pad=
ding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">Fil=
es</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba=
(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: p=
re-wrap; word-break: break-word;">.</code><code class=3D"styles_prerendered=
Code__g5TqW" style=3D"color: rgb(92, 38, 153); display: inline; padding: 0p=
x; margin: 0px; white-space: pre-wrap; word-break: break-word;">write</code=
><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0=
, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap;=
word-break: break-word;">(</code><code class=3D"styles_prerenderedCode__g5=
TqW" style=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; margin:=
0px; white-space: pre-wrap; word-break: break-word;">path</code><code clas=
s=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); di=
splay: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break=
: break-word;">,</code><code class=3D"styles_prerenderedCode__g5TqW" style=
=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px;=
white-space: pre-wrap; word-break: break-word;"> </code><code class=3D"sty=
les_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline=
; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;=
">text</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: =
rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-spac=
e: pre-wrap; word-break: break-word;">.</code><code class=3D"styles_prerend=
eredCode__g5TqW" style=3D"color: rgb(92, 38, 153); display: inline; padding=
: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">bytes</=
code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, =
0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-w=
rap; word-break: break-word;">)</code></div></div></div></div></div></div><=
div data-test=3D"div-atom" class=3D"sc-gsDKAQ eWAXPi"><div data-test=3D"div=
-atom" class=3D"sc-gsDKAQ kTKCSa"><div class=3D"sc-crHmcD fHGTZc" data-test=
=3D"flex-atom"><div class=3D"sc-bBHxTw hjGax MuiAvatar-root MuiAvatar-circu=
lar sc-giYglK jbfWGq" data-test=3D"avatar-atom"><img alt=3D"PR" src=3D"http=
s://reviewer.pullrequest.com/static/media/pr-thumbnail.3df0bfe9e3b2ca092682=
.png" class=3D"sc-iwjdpV iAvrYI MuiAvatar-img"></div><div data-test=3D"div-=
atom" class=3D"sc-gsDKAQ jrzSuB"><div class=3D"sc-crHmcD hZVEdg" data-test=
=3D"flex-atom"></div><div class=3D"jss6"><p>You might consider catching the=
exception(s) thrown by this for logging or error translation: <a href=3D"h=
ttps://docs.oracle.com/javase/7/docs/api/java/nio/file/Files.html#write(jav=
a.nio.file.Path,%20byte%5B%5D,%20java.nio.file.OpenOption" target=3D"_blank=
" rel=3D"noopener noreferrer">https://docs.oracle.com/javase/7/docs/api/jav=
a/nio/file/Files.html#write(java.nio.file.Path,%20byte[],%20java.nio.file.O=
penOption</a>...)</p></div></div></div></div></div><div class=3D"jss5"></di=
v></div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ jZaqvs" style=3D"bre=
ak-before: page;"><div data-test=3D"code-path" class=3D"sc-gsDKAQ jCkGOp"><=
h4 class=3D"sc-furwcr krnJxP text-atom" data-test=3D"h4-atom">plugins/nf-qu=
ilt/src/main/nextflow/quilt/QuiltObserver.groovy</h4></div><div><div><div s=
tyle=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_c=
odeLineContainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ byl=
YDD styles_lineColumn__3loWi" data-test=3D"div-atom">48</div><span class=3D=
"styles_spacer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKA=
Q eZkJGz"><div><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color=
: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-sp=
ace: pre-wrap; word-break: break-word;"> </code><code class=3D"style=
s_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inl=
ine; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-wo=
rd;">//log.debug "QuiltObserver.writeString[$path]: $text"</code></div></di=
v></div></div></div><div><div style=3D"width: 100%; height: 100%;"><div cla=
ss=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qiprS" data-test=3D"div-at=
om"><div class=3D"sc-gsDKAQ bylYDD styles_lineColumn__3loWi" data-test=3D"d=
iv-atom">49</div><span class=3D"styles_spacer__zrrtx"></span><div data-test=
=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div><code class=3D"styles_prerend=
eredCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padd=
ing: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;"> =
</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rg=
b(0, 0, 136); display: inline; padding: 0px; margin: 0px; white-space: pre-=
wrap; word-break: break-word;">Files</code><code class=3D"styles_prerendere=
dCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding=
: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">.</code=
><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(92, 38, =
153); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; wo=
rd-break: break-word;">write</code><code class=3D"styles_prerenderedCode__g=
5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; m=
argin: 0px; white-space: pre-wrap; word-break: break-word;">(</code><code c=
lass=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); disp=
lay: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: =
break-word;">path</code><code class=3D"styles_prerenderedCode__g5TqW" style=
=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px;=
white-space: pre-wrap; word-break: break-word;">,</code><code class=3D"sty=
les_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: i=
nline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-=
word;"> </code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color=
: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0px; white-space: =
pre-wrap; word-break: break-word;">text</code><code class=3D"styles_prerend=
eredCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padd=
ing: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">.</c=
ode><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(92, 3=
8, 153); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap;=
word-break: break-word;">bytes</code><code class=3D"styles_prerenderedCode=
__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px=
; margin: 0px; white-space: pre-wrap; word-break: break-word;">)</code></di=
v></div></div></div></div><div><div style=3D"width: 100%; height: 100%;"><d=
iv class=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qiprS" data-test=3D"=
div-atom"><div class=3D"sc-gsDKAQ bylYDD styles_lineColumn__3loWi" data-tes=
t=3D"div-atom">50</div><span class=3D"styles_spacer__zrrtx"></span><div dat=
a-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div><code class=3D"styles_p=
rerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline=
; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;=
"> </code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: =
rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-spac=
e: pre-wrap; word-break: break-word;">}</code></div></div></div></div></div=
><div><div style=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbg=
EDY styles_codeLineContainer__qiprS" data-test=3D"div-atom"><div class=3D"s=
c-gsDKAQ bylYDD styles_lineColumn__3loWi" data-test=3D"div-atom">51</div><s=
pan class=3D"styles_spacer__zrrtx"></span><div data-test=3D"div-atom" class=
=3D"sc-gsDKAQ eZkJGz"><div></div></div></div></div></div><div><div style=3D=
"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_codeLine=
Container__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD sty=
les_lineColumn__3loWi" data-test=3D"div-atom">52</div><span class=3D"styles=
_spacer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJG=
z"><div><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(=
0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pr=
e-wrap; word-break: break-word;"> </code><code class=3D"styles_prerender=
edCode__g5TqW" style=3D"color: rgb(170, 13, 145); display: inline; padding:=
0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">private<=
/code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0,=
0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-=
wrap; word-break: break-word;"> </code><code class=3D"styles_prerenderedCod=
e__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; ma=
rgin: 0px; white-space: pre-wrap; word-break: break-word;">Session</code><c=
ode class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0=
.87); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; wo=
rd-break: break-word;"> </code><code class=3D"styles_prerenderedCode__g5TqW=
" style=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0p=
x; white-space: pre-wrap; word-break: break-word;">session</code></div></di=
v></div></div></div></div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ eW=
AXPi"><div data-test=3D"div-atom" class=3D"sc-gsDKAQ kTKCSa"><div class=3D"=
sc-crHmcD fHGTZc" data-test=3D"flex-atom"><div class=3D"sc-bBHxTw hjGax Mui=
Avatar-root MuiAvatar-circular sc-giYglK jbfWGq" data-test=3D"avatar-atom">=
<img alt=3D"PR" src=3D"https://reviewer.pullrequest.com/static/media/pr-thu=
mbnail.3df0bfe9e3b2ca092682.png" class=3D"sc-iwjdpV iAvrYI MuiAvatar-img"><=
/div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ jrzSuB"><div class=3D"s=
c-crHmcD hZVEdg" data-test=3D"flex-atom"></div><div class=3D"jss6"><p>You m=
ight consider adding more javadocs for fields and methods since the Nextflo=
w sources appear to be very documented. For example: <a href=3D"https://git=
hub.com/nextflow-io/nextflow/blob/master/plugins/nf-tower/src/main/io/seqer=
a/tower/plugin/TowerClient.groovy" target=3D"_blank" rel=3D"noopener norefe=
rrer">https://github.com/nextflow-io/nextflow/blob/master/plugins/nf-tower/=
src/main/io/seqera/tower/plugin/TowerClient.groovy</a></p></div></div></div=
></div></div><div class=3D"jss5"></div></div><div data-test=3D"div-atom" cl=
ass=3D"sc-gsDKAQ jZaqvs" style=3D"break-before: page;"><div data-test=3D"co=
de-path" class=3D"sc-gsDKAQ jCkGOp"><h4 class=3D"sc-furwcr krnJxP text-atom=
" data-test=3D"h4-atom">plugins/nf-quilt/src/main/nextflow/quilt/QuiltObser=
ver.groovy</h4></div><div><div><div style=3D"width: 100%; height: 100%;"><d=
iv class=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qiprS" data-test=3D"=
div-atom"><div class=3D"sc-gsDKAQ bylYDD styles_lineColumn__3loWi" data-tes=
t=3D"div-atom">59</div><span class=3D"styles_spacer__zrrtx"></span><div dat=
a-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div><code class=3D"styles_p=
rerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline=
; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;=
"> </code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"col=
or: rgb(170, 13, 145); display: inline; padding: 0px; margin: 0px; white-sp=
ace: pre-wrap; word-break: break-word;">def</code><code class=3D"styles_pre=
renderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; =
padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">=
</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(0=
, 0, 136); display: inline; padding: 0px; margin: 0px; white-space: pre-wra=
p; word-break: break-word;">sdf</code><code class=3D"styles_prerenderedCode=
__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px=
; margin: 0px; white-space: pre-wrap; word-break: break-word;"> </code><cod=
e class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.8=
7); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word=
-break: break-word;">=3D</code><code class=3D"styles_prerenderedCode__g5TqW=
" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margi=
n: 0px; white-space: pre-wrap; word-break: break-word;"> </code><code class=
=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(170, 13, 145); displ=
ay: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: b=
reak-word;">new</code><code class=3D"styles_prerenderedCode__g5TqW" style=
=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px;=
white-space: pre-wrap; word-break: break-word;"> </code><code class=3D"sty=
les_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline=
; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;=
">SimpleDateFormat</code><code class=3D"styles_prerenderedCode__g5TqW" styl=
e=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px=
; white-space: pre-wrap; word-break: break-word;">(</code><code class=3D"st=
yles_prerenderedCode__g5TqW" style=3D"color: rgb(196, 26, 22); display: inl=
ine; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-wo=
rd;">"yyyy-MM-dd HH:mm:ss"</code><code class=3D"styles_prerenderedCode__g5T=
qW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; mar=
gin: 0px; white-space: pre-wrap; word-break: break-word;">)</code></div></d=
iv></div></div></div><div><div style=3D"width: 100%; height: 100%;"><div cl=
ass=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qiprS" data-test=3D"div-a=
tom"><div class=3D"sc-gsDKAQ bylYDD styles_lineColumn__3loWi" data-test=3D"=
div-atom">60</div><span class=3D"styles_spacer__zrrtx"></span><div data-tes=
t=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div><code class=3D"styles_preren=
deredCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; pad=
ding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;"> =
</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: r=
gb(170, 13, 145); display: inline; padding: 0px; margin: 0px; white-space: =
pre-wrap; word-break: break-word;">return</code><code class=3D"styles_prere=
nderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; pa=
dding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;"> <=
/code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(0, =
0, 136); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap;=
word-break: break-word;">sdf</code><code class=3D"styles_prerenderedCode__=
g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; =
margin: 0px; white-space: pre-wrap; word-break: break-word;">.</code><code =
class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(92, 38, 153); d=
isplay: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-brea=
k: break-word;">format</code><code class=3D"styles_prerenderedCode__g5TqW" =
style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin:=
0px; white-space: pre-wrap; word-break: break-word;">(</code><code class=
=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display:=
inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: brea=
k-word;">date</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"=
color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; whi=
te-space: pre-wrap; word-break: break-word;">)</code></div></div></div></di=
v></div><div><div style=3D"width: 100%; height: 100%;"><div class=3D"sc-gsD=
KAQ kbgEDY styles_codeLineContainer__qiprS" data-test=3D"div-atom"><div cla=
ss=3D"sc-gsDKAQ bylYDD styles_lineColumn__3loWi" data-test=3D"div-atom">61<=
/div><span class=3D"styles_spacer__zrrtx"></span><div data-test=3D"div-atom=
" class=3D"sc-gsDKAQ eZkJGz"><div><code class=3D"styles_prerenderedCode__g5=
TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; ma=
rgin: 0px; white-space: pre-wrap; word-break: break-word;"> </code><code=
class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87=
); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-=
break: break-word;">}</code></div></div></div></div></div><div><div style=
=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_codeL=
ineContainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD =
styles_lineColumn__3loWi" data-test=3D"div-atom">62</div><span class=3D"sty=
les_spacer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ eZ=
kJGz"><div></div></div></div></div></div><div><div style=3D"width: 100%; he=
ight: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qiprS=
" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD styles_lineColumn__=
3loWi" data-test=3D"div-atom">63</div><span class=3D"styles_spacer__zrrtx">=
</span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div><code cl=
ass=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); =
display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-bre=
ak: break-word;"> </code><code class=3D"styles_prerenderedCode__g5TqW" s=
tyle=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0px; =
white-space: pre-wrap; word-break: break-word;">Set</code><code class=3D"st=
yles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: =
inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break=
-word;"><</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"c=
olor: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0px; white-spa=
ce: pre-wrap; word-break: break-word;">QuiltPackage</code><code class=3D"st=
yles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: =
inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break=
-word;">></code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"c=
olor: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; whit=
e-space: pre-wrap; word-break: break-word;"> </code><code class=3D"styles_p=
rerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; pad=
ding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">ens=
urePkgs</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color:=
rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-spa=
ce: pre-wrap; word-break: break-word;">()</code><code class=3D"styles_prere=
nderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; pa=
dding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;"> <=
/code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0,=
0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-=
wrap; word-break: break-word;">{</code></div></div></div></div></div></div>=
<div data-test=3D"div-atom" class=3D"sc-gsDKAQ eWAXPi"><div data-test=3D"di=
v-atom" class=3D"sc-gsDKAQ kTKCSa"><div class=3D"sc-crHmcD fHGTZc" data-tes=
t=3D"flex-atom"><div class=3D"sc-bBHxTw hjGax MuiAvatar-root MuiAvatar-circ=
ular sc-giYglK jbfWGq" data-test=3D"avatar-atom"><img alt=3D"PR" src=3D"htt=
ps://reviewer.pullrequest.com/static/media/pr-thumbnail.3df0bfe9e3b2ca09268=
2.png" class=3D"sc-iwjdpV iAvrYI MuiAvatar-img"></div><div data-test=3D"div=
-atom" class=3D"sc-gsDKAQ jrzSuB"><div class=3D"sc-crHmcD hZVEdg" data-test=
=3D"flex-atom"></div><div class=3D"jss6"><p>Alternatively, this could initi=
alized to the field value by default:</p>
<pre style=3D"display: block; overflow-x: auto; padding: 0.5em; color: blac=
k;"><code style=3D"word-break: break-all; white-space: pre-wrap;"><span><sp=
an style=3D"color: rgb(170, 13, 145);">private</span><span> </span><span st=
yle=3D"color: rgb(92, 38, 153);">Set</span><span><QuiltPackage> pkgs =
=3D </span><span style=3D"color: rgb(170, 13, 145);">new</span><span> HashS=
et<>()</span></span></code></pre></div></div></div></div></div><div c=
lass=3D"jss5"></div></div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ jZ=
aqvs" style=3D"break-before: page;"><div data-test=3D"code-path" class=3D"s=
c-gsDKAQ jCkGOp"><h4 class=3D"sc-furwcr krnJxP text-atom" data-test=3D"h4-a=
tom">plugins/nf-quilt/src/main/nextflow/quilt/QuiltObserver.groovy</h4></di=
v><div><div><div style=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDK=
AQ kbgEDY styles_codeLineContainer__qiprS" data-test=3D"div-atom"><div clas=
s=3D"sc-gsDKAQ bylYDD styles_lineColumn__3loWi" data-test=3D"div-atom">83</=
div><span class=3D"styles_spacer__zrrtx"></span><div data-test=3D"div-atom"=
class=3D"sc-gsDKAQ eZkJGz"><div><code class=3D"styles_prerenderedCode__g5T=
qW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; mar=
gin: 0px; white-space: pre-wrap; word-break: break-word;"> </cod=
e><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 1=
36); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; wor=
d-break: break-word;">QuiltPath</code><code class=3D"styles_prerenderedCode=
__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px=
; margin: 0px; white-space: pre-wrap; word-break: break-word;"> </code><cod=
e class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); d=
isplay: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-brea=
k: break-word;">qPath</code><code class=3D"styles_prerenderedCode__g5TqW" s=
tyle=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: =
0px; white-space: pre-wrap; word-break: break-word;"> </code><code class=3D=
"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); displa=
y: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: br=
eak-word;">=3D</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D=
"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; wh=
ite-space: pre-wrap; word-break: break-word;"> </code><code class=3D"styles=
_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inli=
ne; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-wor=
d;">(</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: r=
gb(0, 0, 136); display: inline; padding: 0px; margin: 0px; white-space: pre=
-wrap; word-break: break-word;">QuiltPath</code><code class=3D"styles_prere=
nderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; pa=
dding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">)<=
/code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(0, =
0, 136); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap;=
word-break: break-word;">path</code></div></div></div></div></div><div><di=
v style=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY style=
s_codeLineContainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ =
bylYDD styles_lineColumn__3loWi" data-test=3D"div-atom">84</div><span class=
=3D"styles_spacer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gs=
DKAQ eZkJGz"><div><code class=3D"styles_prerenderedCode__g5TqW" style=3D"co=
lor: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white=
-space: pre-wrap; word-break: break-word;"> </code><code class=
=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display:=
inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: brea=
k-word;">QuiltPackage</code><code class=3D"styles_prerenderedCode__g5TqW" s=
tyle=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: =
0px; white-space: pre-wrap; word-break: break-word;"> </code><code class=3D=
"styles_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: in=
line; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-w=
ord;">pkg</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"colo=
r: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-s=
pace: pre-wrap; word-break: break-word;"> </code><code class=3D"styles_prer=
enderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; p=
adding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">=
=3D</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb=
a(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: =
pre-wrap; word-break: break-word;"> </code><code class=3D"styles_prerendere=
dCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; padding: 0px=
; margin: 0px; white-space: pre-wrap; word-break: break-word;">qPath</code>=
<code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0,=
0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; =
word-break: break-word;">.</code><code class=3D"styles_prerenderedCode__g5T=
qW" style=3D"color: rgb(92, 38, 153); display: inline; padding: 0px; margin=
: 0px; white-space: pre-wrap; word-break: break-word;">pkg</code><code clas=
s=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); di=
splay: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break=
: break-word;">()</code></div></div></div></div></div><div><div style=3D"wi=
dth: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_codeLineCon=
tainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD styles=
_lineColumn__3loWi" data-test=3D"div-atom">85</div><span class=3D"styles_sp=
acer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz">=
<div><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, =
0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-w=
rap; word-break: break-word;"> </code><code class=3D"styles_prer=
enderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; paddin=
g: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">ensure=
Pkgs</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rg=
ba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space:=
pre-wrap; word-break: break-word;">().</code><code class=3D"styles_prerend=
eredCode__g5TqW" style=3D"color: rgb(92, 38, 153); display: inline; padding=
: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">add</co=
de><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0,=
0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-wra=
p; word-break: break-word;">(</code><code class=3D"styles_prerenderedCode__=
g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; margi=
n: 0px; white-space: pre-wrap; word-break: break-word;">pkg</code><code cla=
ss=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); d=
isplay: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-brea=
k: break-word;">)</code></div></div></div></div></div><div><div style=3D"wi=
dth: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_codeLineCon=
tainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD styles=
_lineColumn__3loWi" data-test=3D"div-atom">86</div><span class=3D"styles_sp=
acer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz">=
<div><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, =
0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-w=
rap; word-break: break-word;"> </code><code class=3D"styles_prer=
enderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; paddin=
g: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">log</c=
ode><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0=
, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-wr=
ap; word-break: break-word;">.</code><code class=3D"styles_prerenderedCode_=
_g5TqW" style=3D"color: rgb(92, 38, 153); display: inline; padding: 0px; ma=
rgin: 0px; white-space: pre-wrap; word-break: break-word;">debug</code><cod=
e class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.8=
7); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word=
-break: break-word;"> </code><code class=3D"styles_prerenderedCode__g5TqW" =
style=3D"color: rgb(196, 26, 22); display: inline; padding: 0px; margin: 0p=
x; white-space: pre-wrap; word-break: break-word;">"onFilePublish.QuiltPath=
[$qPath]: pkgs=3D${pkgs}"</code></div></div></div></div></div><div><div sty=
le=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_cod=
eLineContainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYD=
D styles_lineColumn__3loWi" data-test=3D"div-atom">87</div><span class=3D"s=
tyles_spacer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ =
eZkJGz"><div><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: =
rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-spac=
e: pre-wrap; word-break: break-word;"> </code><code class=3D"styles_=
prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inlin=
e; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word=
;">}</code></div></div></div></div></div></div><div data-test=3D"div-atom" =
class=3D"sc-gsDKAQ eWAXPi"><div data-test=3D"div-atom" class=3D"sc-gsDKAQ k=
TKCSa"><div class=3D"sc-crHmcD fHGTZc" data-test=3D"flex-atom"><div class=
=3D"sc-bBHxTw hjGax MuiAvatar-root MuiAvatar-circular sc-giYglK jbfWGq" dat=
a-test=3D"avatar-atom"><img alt=3D"PR" src=3D"https://reviewer.pullrequest.=
com/static/media/pr-thumbnail.3df0bfe9e3b2ca092682.png" class=3D"sc-iwjdpV =
iAvrYI MuiAvatar-img"></div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ =
jrzSuB"><div class=3D"sc-crHmcD hZVEdg" data-test=3D"flex-atom"></div><div =
class=3D"jss6"><p>Would there be an error to log here in an else brach?</p>=
</div></div></div></div></div><div class=3D"jss5"></div></div><div data-tes=
t=3D"div-atom" class=3D"sc-gsDKAQ jZaqvs" style=3D"break-before: page;"><di=
v data-test=3D"code-path" class=3D"sc-gsDKAQ jCkGOp"><h4 class=3D"sc-furwcr=
krnJxP text-atom" data-test=3D"h4-atom">plugins/nf-quilt/src/main/nextflow=
/quilt/QuiltObserver.groovy</h4></div><div><div><div style=3D"width: 100%; =
height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qip=
rS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD styles_lineColumn=
__3loWi" data-test=3D"div-atom">107</div><span class=3D"styles_spacer__zrrt=
x"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div></div=
></div></div></div></div><div><div style=3D"width: 100%; height: 100%;"><di=
v class=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qiprS" data-test=3D"d=
iv-atom"><div class=3D"sc-gsDKAQ bylYDD styles_lineColumn__3loWi" data-test=
=3D"div-atom">108</div><span class=3D"styles_spacer__zrrtx"></span><div dat=
a-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div><code class=3D"styles_p=
rerenderedCode__g5TqW" style=3D"color: rgb(196, 26, 22); display: inline; p=
adding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">#=
# processes</code></div></div></div></div></div><div><div style=3D"width: 1=
00%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer=
__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD styles_lineC=
olumn__3loWi" data-test=3D"div-atom">109</div><span class=3D"styles_spacer_=
_zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div>=
<code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(196, 26, =
22); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; wor=
d-break: break-word;">${meta['workflow']['stats']['processes']}</code></div=
></div></div></div></div><div><div style=3D"width: 100%; height: 100%;"><di=
v class=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qiprS" data-test=3D"d=
iv-atom"><div class=3D"sc-gsDKAQ bylYDD styles_lineColumn__3loWi" data-test=
=3D"div-atom">110</div><span class=3D"styles_spacer__zrrtx"></span><div dat=
a-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div></div></div></div></div=
></div><div><div style=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDK=
AQ kbgEDY styles_codeLineContainer__qiprS" data-test=3D"div-atom"><div clas=
s=3D"sc-gsDKAQ bylYDD styles_lineColumn__3loWi" data-test=3D"div-atom">111<=
/div><span class=3D"styles_spacer__zrrtx"></span><div data-test=3D"div-atom=
" class=3D"sc-gsDKAQ eZkJGz"><div><code class=3D"styles_prerenderedCode__g5=
TqW" style=3D"color: rgb(196, 26, 22); display: inline; padding: 0px; margi=
n: 0px; white-space: pre-wrap; word-break: break-word;">"""</code></div></d=
iv></div></div></div></div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ e=
WAXPi"><div data-test=3D"div-atom" class=3D"sc-gsDKAQ kTKCSa"><div class=3D=
"sc-crHmcD fHGTZc" data-test=3D"flex-atom"><div class=3D"sc-bBHxTw hjGax Mu=
iAvatar-root MuiAvatar-circular sc-giYglK jbfWGq" data-test=3D"avatar-atom"=
><img alt=3D"PR" src=3D"https://reviewer.pullrequest.com/static/media/pr-th=
umbnail.3df0bfe9e3b2ca092682.png" class=3D"sc-iwjdpV iAvrYI MuiAvatar-img">=
</div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ jrzSuB"><div class=3D"=
sc-crHmcD hZVEdg" data-test=3D"flex-atom"></div><div class=3D"jss6"><p>Ther=
e's a method called <code>stripIndent()</code> so that this can be indented=
in the source but the indents will be removed from the string. For example=
: <a href=3D"https://github.com/nextflow-io/nextflow/blob/c0a25fc221ae63392=
e2893167acf014b5b056653/modules/nextflow/src/main/groovy/nextflow/script/Ba=
seScript.groovy#L164-L176" target=3D"_blank" rel=3D"noopener noreferrer">ht=
tps://github.com/nextflow-io/nextflow/blob/c0a25fc221ae63392e2893167acf014b=
5b056653/modules/nextflow/src/main/groovy/nextflow/script/BaseScript.groovy=
#L164-L176</a></p></div></div></div></div></div><div class=3D"jss5"></div><=
/div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ jZaqvs" style=3D"break-=
before: page;"><div data-test=3D"code-path" class=3D"sc-gsDKAQ jCkGOp"><h4 =
class=3D"sc-furwcr krnJxP text-atom" data-test=3D"h4-atom">plugins/nf-quilt=
/src/main/nextflow/quilt/QuiltObserver.groovy</h4></div><div><div><div styl=
e=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_code=
LineContainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD=
styles_lineColumn__3loWi" data-test=3D"div-atom">122</div><span class=3D"s=
tyles_spacer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ =
eZkJGz"><div><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: =
rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-spac=
e: pre-wrap; word-break: break-word;"> </code><code class=3D"sty=
les_prerenderedCode__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline=
; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;=
">text</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: =
rgba(0, 0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-spac=
e: pre-wrap; word-break: break-word;"> </code><code class=3D"styles_prerend=
eredCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padd=
ing: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">=3D<=
/code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0,=
0, 0, 0.87); display: inline; padding: 0px; margin: 0px; white-space: pre-=
wrap; word-break: break-word;"> </code><code class=3D"styles_prerenderedCod=
e__g5TqW" style=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; ma=
rgin: 0px; white-space: pre-wrap; word-break: break-word;">readme</code><co=
de class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.=
87); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; wor=
d-break: break-word;">(</code><code class=3D"styles_prerenderedCode__g5TqW"=
style=3D"color: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0px=
; white-space: pre-wrap; word-break: break-word;">meta</code><code class=3D=
"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); displa=
y: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word-break: br=
eak-word;">,</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"c=
olor: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0px; white-spa=
ce: pre-wrap; word-break: break-word;">msg</code><code class=3D"styles_prer=
enderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; p=
adding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;">)=
</code></div></div></div></div></div><div><div style=3D"width: 100%; height=
: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qiprS" da=
ta-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD styles_lineColumn__3loW=
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ce: pre-wrap; word-break: break-word;">JsonOutput</code><code class=3D"styl=
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ord;">.</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color:=
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pre-wrap; word-break: break-word;">toJson</code><code class=3D"styles_prer=
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e class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(196, 26, 22);=
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a-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div><code class=3D"styles_p=
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kbgEDY styles_codeLineContainer__qiprS" data-test=3D"div-atom"><div class=
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div><span class=3D"styles_spacer__zrrtx"></span><div data-test=3D"div-atom"=
class=3D"sc-gsDKAQ eZkJGz"><div><code class=3D"styles_prerenderedCode__g5T=
qW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; mar=
gin: 0px; white-space: pre-wrap; word-break: break-word;"> </code><c=
ode class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(170, 13, 14=
5); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; word=
-break: break-word;">catch</code><code class=3D"styles_prerenderedCode__g5T=
qW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px; mar=
gin: 0px; white-space: pre-wrap; word-break: break-word;"> </code><code cla=
ss=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); d=
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k: break-word;">(</code><code class=3D"styles_prerenderedCode__g5TqW" style=
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e-space: pre-wrap; word-break: break-word;">Exception</code><code class=3D"=
styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display=
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ak-word;"> </code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"co=
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e: pre-wrap; word-break: break-word;">e</code><code class=3D"styles_prerend=
eredCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padd=
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ode><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgba(0, 0=
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ap; word-break: break-word;"> </code><code class=3D"styles_prerenderedCode_=
_g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding: 0px;=
margin: 0px; white-space: pre-wrap; word-break: break-word;">{</code></div=
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v class=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qiprS" data-test=3D"d=
iv-atom"><div class=3D"sc-gsDKAQ bylYDD styles_lineColumn__3loWi" data-test=
=3D"div-atom">126</div><span class=3D"styles_spacer__zrrtx"></span><div dat=
a-test=3D"div-atom" class=3D"sc-gsDKAQ eZkJGz"><div><code class=3D"styles_p=
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"color: rgb(0, 0, 136); display: inline; padding: 0px; margin: 0px; white-s=
pace: pre-wrap; word-break: break-word;">log</code><code class=3D"styles_pr=
erenderedCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline;=
padding: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;"=
>.</code><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(=
92, 38, 153); display: inline; padding: 0px; margin: 0px; white-space: pre-=
wrap; word-break: break-word;">error</code><code class=3D"styles_prerendere=
dCode__g5TqW" style=3D"color: rgba(0, 0, 0, 0.87); display: inline; padding=
: 0px; margin: 0px; white-space: pre-wrap; word-break: break-word;"> </code=
><code class=3D"styles_prerenderedCode__g5TqW" style=3D"color: rgb(196, 26,=
22); display: inline; padding: 0px; margin: 0px; white-space: pre-wrap; wo=
rd-break: break-word;">"publish: QuiltObserver not initialized[$e]"</code><=
/div></div></div></div></div></div><div data-test=3D"div-atom" class=3D"sc-=
gsDKAQ eWAXPi"><div data-test=3D"div-atom" class=3D"sc-gsDKAQ kTKCSa"><div =
class=3D"sc-crHmcD fHGTZc" data-test=3D"flex-atom"><div class=3D"sc-bBHxTw =
hjGax MuiAvatar-root MuiAvatar-circular sc-giYglK jbfWGq" data-test=3D"avat=
ar-atom"><img alt=3D"PR" src=3D"https://reviewer.pullrequest.com/static/med=
ia/pr-thumbnail.3df0bfe9e3b2ca092682.png" class=3D"sc-iwjdpV iAvrYI MuiAvat=
ar-img"></div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ jrzSuB"><div c=
lass=3D"sc-crHmcD hZVEdg" data-test=3D"flex-atom"></div><div class=3D"jss6"=
><p>You might consider rethrowing this exception here because if the data i=
s not initialized correct the following code will likely produce exceptions=
or bad data.</p></div></div></div></div></div><div class=3D"jss5"></div></=
div><div data-test=3D"div-atom" class=3D"sc-gsDKAQ jZaqvs" style=3D"break-b=
efore: page;"><div data-test=3D"code-path" class=3D"sc-gsDKAQ jCkGOp"><h4 c=
lass=3D"sc-furwcr krnJxP text-atom" data-test=3D"h4-atom">plugins/nf-quilt/=
src/main/nextflow/quilt/QuiltObserver.groovy</h4></div><div><div><div style=
=3D"width: 100%; height: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_codeL=
ineContainer__qiprS" data-test=3D"div-atom"><div class=3D"sc-gsDKAQ bylYDD =
styles_lineColumn__3loWi" data-test=3D"div-atom">146</div><span class=3D"st=
yles_spacer__zrrtx"></span><div data-test=3D"div-atom" class=3D"sc-gsDKAQ e=
ZkJGz"><div></div></div></div></div></div><div><div style=3D"width: 100%; h=
eight: 100%;"><div class=3D"sc-gsDKAQ kbgEDY styles_codeLineContainer__qipr=