Skip to content
/ AGx Public

Variant annotation and filtration server ALAPY Genome Explorer

Notifications You must be signed in to change notification settings

ALAPY/AGx

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

8 Commits
 
 
 
 
 
 
 
 

Repository files navigation

Variant annotation and filtration server ALAPY Genome Explorer (AGx)

Standalone server for VCF files annotated with RefSeq, dbSNP, ExAC, ClinVar, 1000 genomes, HGNC, ESP6500, predicted consequences, SIFT, PolyPhen

  • Supports modern browsers on computers, tablets and smartphones

  • Current GUI supports limited analysis functionality that now includes flexible filters and inheritance models with tumor/normal and trio analysis and two column sorting

  • GUI supports history and versioning of your filters, models, analyses and views,

  • You can exports results into sql, txt and csv formats of selected variants.

  • It is free for academic use. Please read EULA here.

Installation

  • We provide installation scripts for Linux systems here.
  • We provide installation wiki here.

Running

  • We provide scripts needed to start the server and add users on Linux systems here.

Usage

  • Please refer to our FAQ here and tutorials on ALAPY YouTube channel.

Please tell us what you think and how we can make it better.

Releases

No releases published

Packages

No packages published

Languages