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Python module to use the annotations created with NeuroCurator, for example in a Jupyter notebook.

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Getting Started | Upgrade | Releases | Status

NeuroAnnotation Toolbox (NAT)

Python module to use the annotations created with NeuroCurator, for example in a Jupyter notebook.

This framework has been described in details in the following open-access paper: https://doi.org/10.3389/fninf.2017.00027.

NAT provides the necessary functions and utilities to:

  • reliably annotate the neuroscientific literature,
  • curate published values for modeling parameters,
  • save them in reusable corpora.

Getting Started

Installation

After having installed the requirements:

pip3 install nat

Before, you might want to create a dedicated environment with conda:

conda create --name nat_env python=3.7
conda activate nat_env

Requirements

Python dependencies

Upgrade

pip3 install --upgrade nat

If you have used conda, activate the environment before:

conda activate nat_env

Releases

Versions and their notable changes are listed in the releases section.

Status

Created during 2016.

Ongoing stabilization and reengineering in the branch refactor-architecture.

The branch refactor-architecture is not intended to be used by end-users.

New features, bug fixes and improvements are done on the reengineered code sections.

When a reengineered code section is stable, it's merged into the branch master and a release is published.