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@CellProfiler

CellProfiler

Software for quantitative analysis of biological images

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  1. CellProfiler Public

    An open-source application for biological image analysis

    Python 977 393

  2. CellProfiler-plugins Public

    Community-contributed and experimental CellProfiler modules.

    Python 65 69

  3. CellProfiler-Analyst Public

    Open-source software for exploring and analyzing large, high-dimensional image-derived data.

    Python 154 74

  4. tutorials Public

    CellProfiler tutorial pipelines and images

    Jupyter Notebook 93 86

  5. examples Public

    Example CellProfiler pipelines.

    Makefile 15 14

Repositories

Showing 10 of 30 repositories
  • CellProfiler Public

    An open-source application for biological image analysis

    Python 977 393 304 19 Updated May 14, 2025
  • tutorials Public

    CellProfiler tutorial pipelines and images

    Jupyter Notebook 93 BSD-3-Clause 86 3 0 Updated May 7, 2025
  • CellProfiler-plugins Public

    Community-contributed and experimental CellProfiler modules.

    Python 65 69 33 10 Updated Apr 28, 2025
  • centrosome Public

    An open source image processing library

    Python 19 36 30 0 Updated Mar 31, 2025
  • core Public

    Core classes and components used by CellProfiler

    Python 6 24 0 0 Updated Nov 12, 2024
  • .github Public

    Default files are stored here, such as code of conduct

    0 0 0 0 Updated Oct 27, 2024
  • distribution Public

    Everything needed to build CellProfiler for your favorite environment.

    Python 4 6 13 0 Updated Sep 26, 2024
  • python-bioformats Public

    Read and write life sciences file formats

    Python 139 48 73 5 Updated Sep 13, 2024
  • python-javabridge Public Forked from LeeKamentsky/python-javabridge

    Python wrapper for the Java Native Interface

    Python 22 64 12 2 Updated Sep 13, 2024
  • CellProfiler-Analyst Public

    Open-source software for exploring and analyzing large, high-dimensional image-derived data.

    Python 154 74 71 5 Updated Aug 15, 2024
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