Skip to content

Latest commit

 

History

History
57 lines (50 loc) · 1.75 KB

CHANGELOG.md

File metadata and controls

57 lines (50 loc) · 1.75 KB
Raw

Change Log

[1.5.1]

Fixed

  • Revert to python 3.8 in Dockerfile to avoid RuntimeError: can't start new thread issue

[1.5]

Changed

  • Updated version of external images used in GitHub actions
  • Updated Python version to v3.11 in tests GitHub action
  • Removed pytest from the package dependencies

Fixed

  • Converted deprecated Pydantic validators and Config into Pydantic 2 format

[1.4]

Changed

  • Updated Pydantic(^2.5.2) library and other dependencies
  • Support Python>=3.8

[1.3]

Fixed

  • Typo in instructions to download genes in README document

Changed

  • Code formatted with black and black check GitHub action
  • Renamed schug.load.ensembl.fetch_ensembl_exon_lines function to schug.load.ensembl.fetch_ensembl_exons
  • Upgraded Python version from 3.8 to 3.11 in Dockerfile
  • Updated several python libraries in poetry.lock

[1.2]

Added

  • Include also mane_plus_clinical and mane_select columns in transcripts file downloaded from Ensembl

Changed

  • Updated Uvicorn library
  • Accept also GRCh37 and GRCh38 as build values when downloading resources

[1.1]

Changed

  • Move the schug directory up in root dir folder

Fixed

  • Use a memory database as default database in demo instance
  • Issues flagged by SonarCloud
  • Publish to PyPI GitHub action

[1.0.0]

Added

  • Endpoint to Ensembl genes download
  • Endpoint to Ensembl transcripts download
  • Endpoint to Ensembl exons download
  • Dockerfile and docker-compose files
  • Push to Docker Hub -prod and stage- GitHub actions
  • Publish to PyPI GitHub actions
  • Run tests GitHub action
  • CHANGELOG file

Changed

  • Run the app with Python>=3.8

Fixed

  • Typing errors in fetch_ensembl_exons and fetch_genes_to_hpo_to_disease that prevented the app from starting