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112 Open 937 Closed
112 Open 937 Closed
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Issues list

Different cDNA length for several Regseq transcript
#1696 opened Jun 8, 2024 by barbarian1803
Missing genes on chrMT when using --refseq
#1695 opened Jun 7, 2024 by ju-mu
@nuno-agostinho
VEP error for structural variation VCF input
#1694 opened Jun 6, 2024 by barbarian1803
@likhitha-surapaneni
2
Use extracted data against of compressed [QUESTION] question
#1692 opened Jun 5, 2024 by GhorbaniAli
@nuno-agostinho
1
From which COSMIC donwlodad file do the "Existing_variation" come?
#1691 opened Jun 5, 2024 by MGCarta
@nuno-agostinho
1
VEP installer not downloading cache files when specified installation htslib Installation and Bio::DB::HTS problem
#1690 opened Jun 3, 2024 by ethankreuzer
@likhitha-surapaneni
1
VCF FORMAT field output in --tab
#1688 opened Jun 3, 2024 by NotAPoetButACriminal
@likhitha-surapaneni
4
Allow passing a github token to avoid rate limit errors enhancement
#1687 opened May 31, 2024 by dvg-p4
@likhitha-surapaneni
1
--exclude_predicted
#1686 opened May 31, 2024 by jammywwh
@olaaustine
2
Possible bug with flag_pick_allele
#1684 opened May 29, 2024 by GACGAMA
@olaaustine
2
Performance and Error Issues with VEP v111 Docker Container docker/singularity
#1681 opened May 23, 2024 by Ananya-swi
@nuno-agostinho
4
Differing ClinVar clinical significance annotation according to transcript/feature bug
#1680 opened May 23, 2024 by growland2
@nuno-agostinho
2
No annotation results from plugins using Singularity docker/singularity
#1679 opened May 22, 2024 by yotsa
@nuno-agostinho
3
--safe option seems broken
#1674 opened May 17, 2024 by bartcharbon
@dglemos
2
NAN allele encoding in JSON output
#1672 opened May 10, 2024 by muppetjones
@jamie-m-a
1
VEP Installation Failed: Failed 2/42 test programs. 0/1752 subtests failed.
#1671 opened May 10, 2024 by Lukecassar21
@nuno-agostinho @jamie-m-a
3
Failed to instantiate plugin dbNSFP: ERROR: Could not retrieve dbNSFP version from filename
#1667 opened Apr 29, 2024 by yougulianren
@nakib103
1
docker run issue and pm module missing
#1666 opened Apr 25, 2024 by vyomesh4bcOnco
@likhitha-surapaneni
9
Alternative allele of matched variants is not reported in custom annotation with overlap method
#1664 opened Apr 24, 2024 by jperales
@likhitha-surapaneni
1
the web file has no image
#1663 opened Apr 23, 2024 by fan040
@likhitha-surapaneni
5
Different output results between only used chm13v2.0_GENCODEv35_CAT_Liftoff.vep.gff3.gz and used chm13v2.0_GENCODEv35_CAT_Liftoff.vep.gff3.gz with other database
#1661 opened Apr 18, 2024 by yougulianren
@olaaustine
5
Outdated or missing genes when using RefSeq cache
#1659 opened Apr 15, 2024 by gabrielhim
@dglemos
5
Haplo results interpratation haplosaurus
#1655 opened Apr 11, 2024 by Jokendo-collab
@nuno-agostinho
1
VEP version 112 outputs HGVSg substitution instead of deletion for one out of the two alternative allele deletions bug e111 e112 hgvs
#1653 opened Apr 9, 2024 by jperales
@nuno-agostinho
8
Using one of the two annotation sources VCF is used when same annotation source name is used
#1651 opened Apr 5, 2024 by Aisha-D
@dglemos
5
ProTip! Adding no:label will show everything without a label.