Fix issue with Open MPI 4, GCC 13, and MPI_Group_range_incl #4112
Workflow file for this run
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| name: Build Tests | |
| on: | |
| pull_request: | |
| types: [opened, synchronize, reopened] | |
| # Do not run if the only files changed cannot affect the build | |
| paths-ignore: | |
| - "**.md" | |
| - "**.json" | |
| - "Python/**" | |
| - ".github/CODEOWNERS" | |
| - ".github/PULL_REQUEST_TEMPLATE.md" | |
| - ".editorconfig" | |
| jobs: | |
| check-ford-docs: | |
| name: Build Ford Docs | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Build and Deploy Docs | |
| uses: ./.github/actions/deploy-ford-docs | |
| with: | |
| # Due to a bug in ford, for now we do *not* want to use | |
| # the full path to the ford input file. Rather, the | |
| # action will cd into docs/Ford and then run ford | |
| # relative path to the ford input file. | |
| ford-input: ford-ci.md | |
| doc-folder: docs/Ford/ci-doc | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| build_test_mapl: | |
| name: Build and Test MAPL GNU | |
| runs-on: ubuntu-latest | |
| container: | |
| image: gmao/ubuntu20-geos-env-mkl:v7.24.0-openmpi_5.0.2-gcc_13.2.0 | |
| # Per https://github.com/actions/virtual-environments/issues/1445#issuecomment-713861495 | |
| # It seems like we might not need secrets on GitHub Actions which is good for forked | |
| # pull requests | |
| #credentials: | |
| #username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| #password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| env: | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| OMPI_MCA_btl_vader_single_copy_mechanism: none | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/cancel-workflow-action@0.12.1 | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Set all directories as git safe | |
| run: | | |
| git config --global --add safe.directory '*' | |
| - name: Versions etc. | |
| run: | | |
| gfortran --version | |
| mpirun --version | |
| echo $BASEDIR | |
| - name: Mepo clone external repos | |
| run: | | |
| mepo init | |
| mepo clone | |
| mepo status | |
| - name: CMake | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake .. -DBASEDIR=$BASEDIR/Linux -DCMAKE_Fortran_COMPILER=gfortran -DCMAKE_BUILD_TYPE=Debug -DMPIEXEC_PREFLAGS='--oversubscribe' | |
| - name: Build | |
| run: | | |
| cd build | |
| make -j4 install | |
| - name: Run MAPL unit tests | |
| run: | | |
| cd build | |
| make -j4 build-tests | |
| ctest -L 'ESSENTIAL' --output-on-failure | |
| build_test_mapl_intel: | |
| name: Build and Test MAPL Intel | |
| runs-on: ubuntu-latest | |
| container: | |
| image: gmao/ubuntu20-geos-env:v7.24.0-intelmpi_2021.6.0-intel_2022.1.0 | |
| # Per https://github.com/actions/virtual-environments/issues/1445#issuecomment-713861495 | |
| # It seems like we might not need secrets on GitHub Actions which is good for forked | |
| # pull requests | |
| #credentials: | |
| #username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| #password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/cancel-workflow-action@0.12.1 | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Set all directories as git safe | |
| run: | | |
| git config --global --add safe.directory '*' | |
| - name: Versions etc. | |
| run: | | |
| ifort --version | |
| mpirun --version | |
| echo $BASEDIR | |
| - name: Mepo clone external repos | |
| run: | | |
| mepo init | |
| mepo clone | |
| mepo status | |
| - name: CMake | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake .. -DBASEDIR=$BASEDIR/Linux -DCMAKE_Fortran_COMPILER=ifort -DCMAKE_BUILD_TYPE=Debug | |
| - name: Build | |
| run: | | |
| cd build | |
| make -j4 install | |
| - name: Run MAPL unit tests | |
| run: | | |
| cd build | |
| make -j4 build-tests | |
| ctest -L 'ESSENTIAL' --output-on-failure |