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@HippocampusGirl HippocampusGirl released this 19 Apr 10:05
1.1.0
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Learn about vigilant mode.

With many thanks to @jstaph for contributions

New features and enhancements

  • Create high-performance computing cluster submission scripts for Torque/PBS
    and SGE cluster as well (#71)
  • Calculate additional statistics such as heterogeneity
    (https://doi.org/fzx69f) and a test that data is
    missing-completely-at-random via logistic regression (#67)
  • Always enable ICA-AROMA even when its outputs are not required for feature
    extraction so that its report image is always available for quality assessment
    (#75)
  • Support loading presets or plugins that may make it easier to do harmonized
    analyses across many sites (#8)
  • Support adding derivatives of the HRF to task-based GLM design matrices
  • Support detecting the amount of available memory when running as a cluster
    job, or when running as a container with a memory limit such as when using
    Docker on Mac

Maintenance

  • Add type hints to code. This allows a type checker like pyright to suggest
    possible error sources ahead of time, making programming more efficient
  • Add openpyxl and xlsxwriter dependencies to support reading/writing Excel
    XLSX files
  • Update numpy, scipy and nilearn versions
  • Add additional automated tests

Bug fixes

  • Fix importing slice timing information from a file after going back to the
    prompt via undo (#55)
  • Fix a warning when loading task event timings from a MAT-file.
    NiftiheaderLoader tried to load metadata for it like it would for a NIfTI file
    (#56)
  • Fix numpy array broadcasting error when loading data from 3D NIfTI files
    that have been somehow marked as being four-dimensional
  • Fix misunderstanding of the output value resels of FSL's smoothest
    command. The value refers to the size of a resel, not the number of them in
    the image. The helper function _critical_z now taked this into account now.
    (nipy/nipype#3316)
  • Fix naming of output files in derivatives/halfpipe and grouplevel folder
    so that capitalization is consistent with original IDs and names (#57)
  • Fix the summary display after BIDS import to show the number of "subjects"
    and not the number of "subs"
  • Fix getting the required metadata fields for an image type by implementing a
    helper function
  • Fix outputting source files for the quality check web app (#62)
  • Fix assigning field maps to specific functional images, which is done by a
    mapping between field map taks and functional image tags. The mapping is
    automatically inferred for BIDS datasets and manually specified otherwise
    (#66)
  • Force re-calculation of nipype workflows after HALFpipe update so that
    changes from the new version are applied in existing working directories as
    well
  • Do not fail task-based feature extraction if no events are available for a
    particular condition for a particular subject (#58)
  • Force using a recent version of the indexed_gzip dependency to avoid error
    (#85)
  • Improve loading delimited data in loadspreadsheet function
  • Fix slice timing calculation in user interface
Assets 2