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Issues list

Lazy loading of optimization results from HDF5 enhancement New feature or request
#1405 opened May 22, 2024 by dweindl
pyjulia is no longer maintained Julia
#1397 opened May 7, 2024 by m-philipps
@m-philipps
Frequent readthedocs timeout CI documentation
#1396 opened May 7, 2024 by PaulJonasJost
1
Check pypesto/sample/geweke_test.py calculate_zscore/spectrum0/spectrum sampling Related to sampling
#1392 opened May 5, 2024 by dweindl
Handling of simulation failures in AmiciPredictor AMICI ensembles Related to parameter ensembles
#1359 opened Apr 4, 2024 by dweindl
General Discussion regarding Ensemble ensembles Related to parameter ensembles help wanted Extra attention is needed question Further information is requested
#1358 opened Apr 4, 2024 by PaulJonasJost
7
What's the purpose of Ensemble.predictions? ensembles Related to parameter ensembles question Further information is requested
#1357 opened Apr 4, 2024 by dweindl
1
Relative: implement log-normal distribution enhancement New feature or request hierarchical Related to hierarchical optimization
#1350 opened Apr 2, 2024 by Doresic
Visualize: add description of scale in parameter plots enhancement New feature or request visualization Related to any visualization
#1335 opened Mar 25, 2024 by Doresic
Easy switching between likelihood and posterior enhancement New feature or request
#1325 opened Mar 11, 2024 by arrjon
2
Adaptive Stopping and Continuation of Sampling enhancement New feature or request
#1322 opened Mar 8, 2024 by arrjon
1
Enable saving custom information with OptimizerResult enhancement New feature or request
#1321 opened Mar 8, 2024 by dweindl
All CPUs are utilized for np.linalg.eig/h, ndim dependent bug Something isn't working
#1312 opened Feb 27, 2024 by dilpath
3
Decouple PEtab and AMICI enhancement New feature or request
#1301 opened Feb 1, 2024 by dilpath
@PaulJonasJost
1
pypesto.ensemble.ensemble.EnsemblePrediction.compute_chi2 incorrectly assumes all edatas have equal number of timepoints bug Something isn't working ensembles Related to parameter ensembles
#1296 opened Jan 25, 2024 by dweindl
Doc: Update feature overview documentation
#1295 opened Jan 25, 2024 by dweindl
@PaulJonasJost
Decouple pypesto.ensemble.ensemble.Ensemble from pypesto.predict.amici_predictor.AmiciPredictor AMICI ensembles Related to parameter ensembles
#1294 opened Jan 25, 2024 by dweindl
1
Decouple AmiciPredictor from AmiciObjective AMICI enhancement New feature or request ensembles Related to parameter ensembles
#1291 opened Jan 23, 2024 by dweindl
1
Fix time axis in pypesto.visualize.sampling.sampling_prediction_trajectories ensembles Related to parameter ensembles visualization Related to any visualization
#1290 opened Jan 23, 2024 by dweindl
Add dedicated example for ensembles documentation enhancement New feature or request ensembles Related to parameter ensembles
#1289 opened Jan 19, 2024 by dweindl
Add parameter labels to pypesto.visualize.ensemble.ensemble_identifiability enhancement New feature or request ensembles Related to parameter ensembles visualization Related to any visualization
#1288 opened Jan 18, 2024 by dweindl
test/julia/test_pyjulia.py:62: AssertionError CI
#1281 opened Jan 10, 2024 by dweindl
@PaulJonasJost
Add warmstart option for (sac)ess enhancement New feature or request optimization Related to optimization process
#1280 opened Jan 10, 2024 by dweindl
Log-friendly tqdm/progress output enhancement New feature or request
#1273 opened Jan 8, 2024 by dilpath
Doc: optimizer overview documentation optimization Related to optimization process
#1267 opened Jan 5, 2024 by dweindl
@PaulJonasJost
ProTip! Follow long discussions with comments:>50.