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40 Open 130 Closed
40 Open 130 Closed
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Issues list

line_terminator not lineterminator use in .to_csv from pandas throws error with pandas > 1.5 bug Something isn't working continuous integration Relating to continuously updating Autometa integrations hotfix bug causing issues in main that should be resolved immediately
#350 opened Nov 12, 2023 by hyphaltip
1
NA ambiguous in recursive_dbscan bug Something isn't working
#349 opened Nov 12, 2023 by hyphaltip
3
ncbi rsync error when downloading markers
#347 opened Oct 31, 2023 by hyphaltip
kingdoms does not need to be defined multiple times in workflows/autometa_flagged.sh
#332 opened Jul 19, 2023 by jason-c-kwan
Fix Biopython deprecation warning deprecation Method that will be deprecated in later versions that should be updated. good first issue Good for newcomers python Python related issues/code
#326 opened May 16, 2023 by evanroyrees
Look into using taxon result limited blastp instead of top-n limited enhancement New feature or request nextflow Nextflow related issues/code python Python related issues/code stretch wonderful for the community, yet may not be top priority
#322 opened Apr 5, 2023 by chasemc
1
Fix BLAST results protein to taxonomic accession assignment
#317 opened Mar 30, 2023 by chasemc
1
Change arg name --norm-output for autometa-kmers entrypoint
#310 opened Mar 16, 2023 by chasemc
2
Move unrelated files out of Nextflow pipeline directory
#309 opened Mar 14, 2023 by chasemc
@evanroyrees @Sidduppal
1
Missing example data causes gdown script to fail bug Something isn't working good first issue Good for newcomers
#308 opened Mar 14, 2023 by chasemc
@ajlail98
4
Add helpful error message enhancement New feature or request good first issue Good for newcomers
#306 opened Mar 14, 2023 by chasemc
@ajlail98
1
Documentation needs edit documentation Improvements or additions to documentation good first issue Good for newcomers
#304 opened Feb 24, 2023 by chasemc
1
@kaw97 @Sidduppal
🐍 Replace attrs with dataclasses good first issue Good for newcomers python Python related issues/code
#303 opened Jan 4, 2023 by evanroyrees
Replace prodigal subprocess with pyrodigal enhancement New feature or request good first issue Good for newcomers stretch wonderful for the community, yet may not be top priority
#301 opened Dec 28, 2022 by evanroyrees
error: archaea.markers.tsv not found help wanted Extra attention is needed
#298 opened Dec 12, 2022 by Valentin-Bio-zz
2
Running the test profile fails, unable to find docker image bug Something isn't working
#291 opened Sep 6, 2022 by chasemc
1
🐌 ➡️ 🐎 Optimize DBSCAN clustering method for genome binning enhancement New feature or request stretch wonderful for the community, yet may not be top priority
#287 opened Aug 7, 2022 by evanroyrees
Add threads for for bowtie2-build enhancement New feature or request good first issue Good for newcomers nextflow Nextflow related issues/code
#263 opened Apr 18, 2022 by chasemc
@kaw97 @shaneroesemann @ajlail98
🐛🪲 Prevent edge case where MAG completeness is incorrectly computed bug Something isn't working
#255 opened Apr 5, 2022 by evanroyrees
Migrate documentation from reStructuredText to MyST Markdown documentation Improvements or additions to documentation good first issue Good for newcomers
#240 opened Feb 18, 2022 by evanroyrees
@kaw97
4
Notes on how to upgrade to current nf-core standards enhancement New feature or request nextflow Nextflow related issues/code stretch wonderful for the community, yet may not be top priority
#226 opened Jan 25, 2022 by chasemc
1
Add Jupyter notebook examples / autometa code snippets documentation Improvements or additions to documentation good first issue Good for newcomers
#214 opened Jan 7, 2022 by evanroyrees
5 tasks
Pipeline fails if number of splits is greater than number of input contigs enhancement New feature or request good first issue Good for newcomers nextflow Nextflow related issues/code
#205 opened Dec 16, 2021 by chasemc
2
Split input fasta file, smartly enhancement New feature or request good first issue Good for newcomers
#193 opened Oct 18, 2021 by chasemc
Animations in methods documentation documentation Improvements or additions to documentation enhancement New feature or request stretch wonderful for the community, yet may not be top priority
#172 opened Jun 7, 2021 by evanroyrees
3 of 40 tasks
8
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