Microscope-Calibration

Tools to calibrate a microscope

Rotation and handedness

See preprint at https://arxiv.org/abs/2403.08538 for a description and https://github.com/LiberTEM/Microscope-Calibration/blob/main/examples/stem_overfocus.ipynb for an example.

Changelog

Since deposition https://doi.org/10.5281/zenodo.10418769

• Fix definition of camera length in the simulator to match figure in https://arxiv.org/pdf/2403.08538.pdf, PR #17. Previously, the camera length was defined from the focus point, not the specimen plane. See also TemGym/TemGym#33 for the corresponding update in TemGym. Note that the TemGym model used for calculation was correct, only the alternative manual ray tracing implementation was affected.