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17 Open 292 Closed
17 Open 292 Closed
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Issues list

Undefined subroutine &main::prepare_gffout called at agat_convert_sp_gxf2gxf.pl line 52.
#459 opened May 15, 2024 by karthickbrlab
1
agat_sp_merge_annotations.pl output incompatible with cellranger
#457 opened May 6, 2024 by LliliansCalvo
1
agat_convert_mfannot2gff.pl produces wrong coordinate for feature starts/ends at position 1
#455 opened May 3, 2024 by KeFungi
2
agat_sp_extract_sequences.pl: support for multicistronic transcripts.
#451 opened Apr 8, 2024 by jdcla
agat_sp_extract_sequences.pl does not incorporate CDS feature ID in headers enhancement New feature or request
#450 opened Apr 8, 2024 by jdcla
5
agat_sp_fix_longest_ORF.pl default codon table documentation Improvements or additions to documentation
#420 opened Feb 4, 2024 by jvolkening
3
AGAT not working in perl 5.38 bug Something isn't working help wanted Extra attention is needed
#416 opened Jan 12, 2024 by kgaisser
5
Possible tabular format for agat_sp_statistics.pl
#401 opened Oct 12, 2023 by KristinaGagalova
2
Keep records based on canonical transcript ID
#400 opened Oct 10, 2023 by jahemker
AGAT compatible with Perl 5.36 ? help wanted Extra attention is needed
#392 opened Aug 23, 2023 by eylenth
6
Tiny bug - gtf output header
#386 opened Aug 1, 2023 by SheepwormJM
2
add a check in OmniscientI check_identical_loci
#334 opened Feb 17, 2023 by Juke34
agat statistics enhancement request enhancement New feature or request
#307 opened Dec 2, 2022 by sanyalab
2
URL Escape Characters Converted
#250 opened May 6, 2022 by skchronicles
3
Creating a Hints file for use in Augustus from a gff file help wanted Extra attention is needed
#177 opened Sep 19, 2021 by sanyalab
6
Venn diagramm enhancement New feature or request
#81 opened Oct 19, 2020 by mictadlo
agat_sp_statistics.pl add an option to collapse overlapping part enhancement New feature or request
#26 opened Mar 3, 2020 by Juke34
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