Scripts to count GC3
Current script pipeline:
- chrm_GCcontent.py
- (calculate GC content per chromosome)
- get_GC3_priamry.py
- (calculate GC3 content per chromosome)
- prot_blast.py
- (BLAST all outliers to find candidate GOIs)
- get_trimmed_allhits.py
- (align and trim GOIs)
- orthofinder_GC3.py
- (retrieve GC3 and chromosome information for orthofinder orthogroup)
- get_stats-orthologues.py
- (run F and T test on data)
- get_singlecopy_iqtree.py
- (Create an species tree for all speices used)
- order_by_species-tree.py
- (Order comparison tsv file according to the produced species tree)