This repository is an Example using GitHub Actions [egge] for the Advanced Programming with R class. The project consists of a quarto document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last update was on 2024-06-09 00:42:38.
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Analysis of rural broadband adoption dynamics: A theory-driven agent-based model.
Agarwal A, Canfield C.
PLoS One. 2024 Jun 6;19(6):e0302146. doi: 10.1371/journal.pone.0302146. eCollection 2024.
However, there is typically insufficient data available to understand consumer attitudes. We propose using an agent-based model grounded in the Theory of Planned Behavior, a behavioral theory that explains the consumer’s decision-making process. The model …
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Elucidating the interaction between stretch and stiffness using an agent-based spring network model of progressive pulmonary fibrosis.
Hall JK, Bates JHT, Krishnan R, Kim JH, Deng Y, Lutchen KR, Suki B.
Front Netw Physiol. 2024 May 22;4:1396383. doi: 10.3389/fnetp.2024.1396383. eCollection 2024.
Pulmonary fibrosis is a deadly disease that involves the dysregulation of fibroblasts and myofibroblasts, which are mechanosensitive. Previous computational models have succeeded in modeling stiffness-mediated fibroblasts behaviors; however, these models have …
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How can agent-based modelling provide new insights into the impact of minimum unit pricing in Scotland?
Boyd J, Holmes J, Gibbs N, Buckley C, Purshouse R, Meier P.
Drug Alcohol Rev. 2024 Jun 5. doi: 10.1111/dar.13880. Online ahead of print.
., balance between on-licence and off-licence outlets), lead to long-term population-level trends (e.g., youth drinking) and social harms (e.g., violence). Agent-based modelling captures heterogeneity, emergence, feedback loops and adaptive and dynamic featur …
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Game-theoretic agent-based modelling of micro-level conflict: Evidence from the ISIS-Kurdish war.
Macmillan-Scott O, Ünver A, Musolesi M.
PLoS One. 2024 Jun 5;19(6):e0297483. doi: 10.1371/journal.pone.0297483. eCollection 2024.
This article delves into the dynamics of a dyadic political violence case study in Rojava, Northern Syria, focusing on the conflict between Kurdish rebels and ISIS from January 1, 2017, to December 31, 2019. We employ agent-based modelling and a formalisation …
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COVID-19 outbreaks in residential aged care facilities: an agent-based modeling study.
McAndrew F, Sacks-Davis R, Abeysuriya RG, Delport D, West D, Parta I, Majumdar S, Hellard M, Scott N.
Front Public Health. 2024 May 21;12:1344916. doi: 10.3389/fpubh.2024.1344916. eCollection 2024.
INTRODUCTION: A disproportionate number of COVID-19 deaths occur in Residential Aged Care Facilities (RACFs), where better evidence is needed to target COVID-19 interventions to prevent mortality. This study used an agent-based model to assess the role of com …
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Pleiotropy alleviates the fitness costs associated with resource allocation trade-offs in immune signalling networks.
Martin RA, Tate AT.
Proc Biol Sci. 2024 Jun;291(2024):20240446. doi: 10.1098/rspb.2024.0446. Epub 2024 Jun 5.
To investigate factors that could influence the evolutionary maintenance of pleiotropy in gene networks, we developed an agent-based model of co-evolution between parasites and hosts. Hosts comprise signalling networks that must faithfully complete a developm …
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Agent-based model demonstrates the impact of nonlinear, complex interactions between cytokinces on muscle regeneration.
Haase M, Comlekoglu T, Petrucciani A, Peirce SM, Blemker SS.
Elife. 2024 Jun 3;13:RP91924. doi: 10.7554/eLife.91924.
To understand the degree to which individual cellular behaviors impact endogenous mechanisms of muscle recovery, we developed an agent-based model (ABM) using the Cellular-Potts framework to simulate the dynamic microenvironment of a cross-section of murine s …
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Surrogate Modeling and Control of Medical Digital Twins.
Fonseca LL, Böttcher L, Mehrad B, Laubenbacher RC.
ArXiv [Preprint]. 2024 May 20:arXiv:2402.05750v2.
This paper introduces surrogate modeling algorithms for the purpose of optimal control applications. As a use case, we focus on agent-based models (ABMs), a common model type in biomedicine for which there are no readily available optimal contro …
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Spatial interactions modulate tumor growth and immune infiltration.
West J, Marzban S, Srivast S, Kartika S, Bravo R, Safriel R, Zarski A, Anderson A, Chung C, Amelio A.
Res Sq [Preprint]. 2024 May 22:rs.3.rs-3962451. doi: 10.21203/rs.3.rs-3962451/v1.
Historically, agent-based models of cancer progression have been constructed with rules that govern birth, death and migration, with attempts to map local rules to emergent global growth dynamics. …Lenia is subsequently used to develop data-informed mode …
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Liquid-like condensates that bind actin drive filament polymerization and bundling.
Walker C, Chandrasekaran A, Mansour D, Graham K, Torres A, Wang L, Lafer EM, Rangamani P, Stachowiak JC.
bioRxiv [Preprint]. 2024 May 22:2024.05.04.592527. doi: 10.1101/2024.05.04.592527.
To probe the minimum requirements for condensate-mediated actin bundling, we developed an agent-based computational model. Guided by its predictions, we hypothesized that any condensate-forming protein that binds actin could bundle filaments through multivale …
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