accoleon / pipping Public

Code and report for a small tool to optimize 16S sequencing pipelines

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Name		Name	Last commit message	Last commit date
Latest commit History 56 Commits
data		data
thesis		thesis
.gitignore		.gitignore
FASTQ.py		FASTQ.py
FASTQSequence.C		FASTQSequence.C
FASTQSequence.h		FASTQSequence.h
Piper.C		Piper.C
Piper.h		Piper.h
README.md		README.md
atomicops.h		atomicops.h
catch.hpp		catch.hpp
commands.C		commands.C
commands.h		commands.h
db_setup.py		db_setup.py
fastq.h		fastq.h
find_primers.py		find_primers.py
gref.C		gref.C
import_reads.py		import_reads.py
insert_accelerator.C		insert_accelerator.C
makefile		makefile
newpack.C		newpack.C
newpack.h		newpack.h
pip.C		pip.C
print_as_fastq.py		print_as_fastq.py
readerwriterqueue.h		readerwriterqueue.h
shell.c		shell.c
sqlite3.c		sqlite3.c
sqlite3.h		sqlite3.h
sqlite3ext.h		sqlite3ext.h
stream_trimmomatic.C		stream_trimmomatic.C
stream_trimmomatic.h		stream_trimmomatic.h
testFASTQ		testFASTQ
testFASTQ.C		testFASTQ.C
testFastRead		testFastRead
testFastRead.C		testFastRead.C
testPack.C		testPack.C
testRawWrite.C		testRawWrite.C
testpipe.sh		testpipe.sh
testrv_16S.sh		testrv_16S.sh