v0.0.8.0

What's Changed

New features

• New script discretization/correct_intermittent_dtrj.py that corrects the intermittent behavior of a discrete trajectory by @andthum in #202
• Scripts discretization/back_jump_prob.py and discretization/back_jump_prob_discrete.py: Return normalization factors by @andthum in #201
• Functions mdtools.dtrj.back_jump_prob and mdtools.dtrj.back_jump_prob_discrete: Add a new argument return_norm that allows the user to return the normalization factor of the back-jump probability by @andthum in #192
• misc/dtrj_lifetimes/compare_dtrj_lifetime_methods.py: Additionally calculate lifetimes from the Kaplan-Meier estimate of the survival function by @andthum in #189

Bug fixes

• Scripts scripts/dynamics/msd_layer_serial.py and scripts/dynamics/msd_layer_parallel.py: Bin the wrapped particle positions in box coordinates instead of Cartesian coordinates to account for potentially fluctuating simulation boxes by @andthum in #203
• Functions mdtools.dtrj.kaplan_meier and mdtools.dtrj.leave_prob: Fix consistency checks by @andthum in #199
• Scripts axial_hex_distribution_1nn.py and axial_hex_distribution_2nn.py: Fix the search algorithms for finding the first column(s) and row(s) of a hexagonal lattice when the lattice faces lie (almost) exactly on the edges of the simulation box by @andthum in #197, #198
• Script dynamics/extract_renewal_events.py: The information about the reference group in the output file was not about the reference but the selection group. Fixed by @andthum in #187
• Include information about memory consumption in progress bars of some functions in the module mdtools.dtrj by @andthum in #186

Code refactoring

• Add more consistency checks to the functions mdtools.dtrj.back_jump_prob and mdtools.dtrj.back_jump_prob_discrete by @andthum in #190, #191, #193, #195, #196

Full Changelog: v0.0.7.0...v0.0.8.0