Name		Name	Last commit message	Last commit date
Latest commit History 31 Commits
align		align
apply_bed_filter		apply_bed_filter
bin		bin
bqsr		bqsr
combine		combine
combine_vcf		combine_vcf
freebayes		freebayes
gatk-hc		gatk-hc
gatk-ug		gatk-ug
glia		glia
platypus		platypus
split_chr		split_chr
split_fastq		split_fastq
vqsr		vqsr
.gitignore		.gitignore
GATK-pdf.pdf		GATK-pdf.pdf
GenomeAnalysisTKLite.jar		GenomeAnalysisTKLite.jar
HG00096.lowcov.settings		HG00096.lowcov.settings
LICENSE		LICENSE
MarkDuplicates.jar		MarkDuplicates.jar
README.md		README.md
bin.tar.gz		bin.tar.gz
download_reference.sh		download_reference.sh
exome.settings		exome.settings
general_settings.sh		general_settings.sh
install_dependencies.sh		install_dependencies.sh
pipeline.sh		pipeline.sh
pre_script.sh		pre_script.sh
snyderome.settings		snyderome.settings
swe		swe