beroukhim-lab
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GATK_CN_CWL
GATK_CN_CWL PublicImplementation of the GATK copy number pipeline in CWL (ported from WDL)
Common Workflow Language 1
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Repositories
Showing 10 of 11 repositories
- gatk4-data-processing Public Forked from gatk-workflows/gatk4-data-processing
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
- BISCUT-py3 Public
- ancestry_manuscript_code Public
- gistic_reference Public
- ascets Public
This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted average log2 segment means from segmented copy number data.
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