v5.4.9

🧬 Features

• [RFC77] Filter buttons on the landing page study search menu @TJMKuijpers (#4721)
• Add group percentages to oncoprint @alisman (#4756)

✨ Enhancements

• Add user color configuration for oncoprint @gblaih (#4699)
• Change gene add behavior to improve user experience @alisman (#4770)

🐛 Bug Fixes

• Use appropriate genome-nexus url depending on study @kalletlak (#4787)
• Restore asterisks in oncoprint track percentage labels @alisman (#4779)
• Fix for endless loop preventing gene update using modify query interface (after direct load of results of view) @alisman (#4778)

👷‍♀️ Testing, Configuration & Deployment

• Fix spec import that is currently breaking local db test report @alisman (#4781)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.8...v5.4.9
• Frontend: v5.4.8...v5.4.9

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.8

✨ Enhancements

• Fix incorrect oncokb data and cancer type label used in mutations table @gblaih (#4758)

🐛 Bug Fixes

• Clinical attribute types with priority of zero should not appear by default on study view @alisman (#4768)
• Study view: fix comparison session generation from study view bin cha… @alisman (#4767)

👷‍♀️ Testing, Configuration & Deployment

• Update screenshots with civic disabled @alisman (#4769)
• Update screenshots after oncokb update and pie chart label change @alisman (#4766)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.7...v5.4.8
• Frontend: v5.4.7...v5.4.8

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.7

🐛 Bug Fixes

• Refactor to allow pie and table charts to download both full and summary data @alisman (#4762)
• Fix SVG download (prevent embedding of css) @alisman (#4761)
• Fix link to MKS Impact study agreement @alisman (#4759)
• Add download data and PDF option @TJMKuijpers (#4757)

🎨 Style Tweaks

• Patient timeline: Make sure sample acquisition track always appears above sequencing @alisman (#4760)

🧰 Maintenance

• Update API clients @alisman (#4765)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.6...v5.4.7
• Frontend: v5.4.6...v5.4.7

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.6

🧬 Features

• RFC69 : survival chart with landmark events and hazard ratio @TJMKuijpers (#4740)
• match cna chart colors with oncoprint and adjust label colors according to slice brightness @h164654156465 (#4750)

🎨 Style Tweaks

• Genie portal timeline: tweak track ordering for assessment tracks @alisman (#4754)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.5...v5.4.6
• Frontend: v5.4.5...v5.4.6

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.5

🐛 Bug Fixes

• Fix search issue in SV table when site1 gene is missing @alisman (#4752)
• Patient page: fix Clinical Events table search (handle numerical data) @alisman (#4751)

👷‍♀️ Testing, Configuration & Deployment

• Configure left logo in the cBioPortal header via 'skin.left_logo' property @pvannierop (#4747)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.4...v5.4.5
• Frontend: v5.4.4...v5.4.5

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.4

🧬 Features

• Enable Results View Structural Variants Tab @inodb (#4745)

✨ Enhancements

• On patient page, default to SBS mutational signatures @alisman (#4748)

🐛 Bug Fixes

• StudyView: in manual submit mode, prevent user from clearing with UI @alisman (#4738)
• Resolve fetching genomic chart datatype for logged in user @kalletlak (#4742)

🎨 Style Tweaks

• Update home page citation @dippindots (#4741)

👷‍♀️ Testing, Configuration & Deployment

• [RFC68] Enable Struct Var table feature on Study View with 'skin.study_view.show_sv_table' property @pvannierop (#4744)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.3...v5.4.4
• Frontend: v5.4.3...v5.4.4

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.3

✨ Enhancements

• [RFC 76] Redesign oncoprint annotation menu @BasLee (#4709)

🐛 Bug Fixes

• Fix SV pane search box: Only filter genes when present @BasLee (#4711)

🎨 Style Tweaks

• Remove revue from Annotation column sorting @leexgh (#4739)

📐 Prototype (Internal Use)

• (GSoC) Generic Assay Categorical/Binary data implementation Frontend @Djokovic0311 (#4686)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.2...v5.4.3
• Frontend: v5.4.2...v5.4.3

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.2

🐛 Bug Fixes

• search returns false for bad regex @jfkonecn (#4719)

👷‍♀️ Testing, Configuration & Deployment

• Update google analytics implementation @alisman (#4718)

🧰 Maintenance

• Update yarn lock file @dippindots (#4722)
• Bump semver from 5.6.0 to 5.7.2 @dependabot (#4664)
• Bump word-wrap from 1.2.3 to 1.2.4 @dependabot (#4668)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.1...v5.4.2
• Frontend: v5.4.1...v5.4.2

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.1

🧬 Features

• Discrete molecular data counts @h164654156465 (#4706)

✨ Enhancements

• Add property to define custom sample type colors in patient view @BasLee (#4704)
• Improve non-profiled gene panel links in oncoprint tooltip @BasLee (#4701)
• Fix hidden non-genomic data when excluding VUS in oncoprint @BasLee (#4712)
• Extend sample type colors in patient view @BasLee (#4679)

🏎 Performance Tweaks

• Significantly reduce loading time for mutations table in comparison page @gblaih (#4714)

👷‍♀️ Testing, Configuration & Deployment

• Update API clients and fix screenshots after Oncobk update @alisman (#4715)
• Add e2e tests for Interactive Web Tour @Beking0912 (#4700)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.0...v5.4.1
• Frontend: v5.4.0...v5.4.1

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.0

✨ Enhancements

• Enhancements to patient page @kalletlak (#4695)

👷‍♀️ Testing, Configuration & Deployment

• Update mysql 8 connection string for localdb tests @dippindots (#4710)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.19...v5.4.0
• Frontend: v5.3.19...v5.4.0

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning