v6.0.7

🐛 Bug Fixes

• Study page clinical data tab: fix download after pagination change @alisman (#4912)
• Show all survival attributes and remove duplicates in study clinical data tab @gblaih (#4883)

👷‍♀️ Testing, Configuration & Deployment

• Update screenshots after data change and update to paginated clinical data table @alisman (#4910)
• Fix error logs not displaying error response @gblaih (#4904)

🧰 Maintenance

• Update ts clients and code based on changes to treatment endpoints (moved to internal) @alisman (#4908)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.6...v6.0.7
• Frontend: v6.0.6...v6.0.7

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.6

🧬 Features

• Mutation pie chart and multi-selection table @7xuanlu (#4794)
• Remove feature flag for categorical generic assay group comparison @dippindots (#4894)

✨ Enhancements

• set showNA to false by default @olzhasmukayev (#4876)
• ✨New Feature: Remove Gene Tracks from Oncoprint @SAHU-01 (#4861)
• Paginated download of data for Clinical Data tab in Study View @pvannierop (#4786)

🐛 Bug Fixes

• Fixed png download for group comparison clinical data @khaledfahmy123 (#4888)
• Fix issue with sv tab sending large list of mutations for annotation @gblaih (#4885)
• Fix newsletter button @SURAJ-SHARMA27 (#4890)
• Fix getting molecular profile ids from key @kalletlak (#4899)

🎨 Style Tweaks

• fix menu stretch in long confirmation messages @mhsh312 (#4892)
• add banner for newsletter @alisman (#4886)

👷‍♀️ Testing, Configuration & Deployment

• update screenshot after intro of plots tab to studyview @alisman (#4884)

📘 Documentation

• Update README with instructions for installing e2e deps after WDIO 7.0 upgrade @alisman (#4889)

🧰 Maintenance

• Update ts clients based fixed mutation data count signature @alisman (#4903)
• Upgrade webdriver.io to v7 and begin migration of tests from sync to asyn @alisman (#4846)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.5...v6.0.6
• Frontend: v6.0.5...v6.0.6

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.5

🧬 Features

• Add plots tab to study view @gblaih (#4802)
• Study view custom sample selection with multi study @7xuanlu (#4867)

✨ Enhancements

• Added select all button and remove all button for columns on SV data @olzhasmukayev (#4872)
• Added button to open iframe source @khaledfahmy123 (#4874)

🎨 Style Tweaks

• fix the padding on the new section @olzhasmukayev (#4880)

👷‍♀️ Testing, Configuration & Deployment

• Update url navigation for e2e tests to first go to blank page @gblaih (#4860)
• Update to remove legacy db properties @haynescd (#4873)
• 🔧 Update keycloak image to quay.io @haynescd (#4869)

🧰 Maintenance

• Update api clients after change for mutation data filter @alisman (#4875)

🧰 Maintenance

• 🔧 Update keycloak image to quay.io @haynescd (#4869)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.4...v6.0.5
• Frontend: v6.0.4...v6.0.5

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.4

🐛 Bug Fixes

• Fix surivival chart for large cohort label overlap (number at risk) @TJMKuijpers (#4833)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.3...v6.0.4
• Frontend: v6.0.3...v6.0.4

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.3

🧬 Features

• Adding Customizable Custom Driver Column to Mutation, CNA, and SV Table @7xuanlu (#4840)

✨ Enhancements

• Adding Customizable Custom Driver Column to Mutation, CNA, and SV Table @7xuanlu (#4840)
• 🔨Refactor code: retrieve ndex tooltip information dynamically @SAHU-01 (#4847)

🐛 Bug Fixes

• PR for issue #10669 number at risk table @TJMKuijpers (#4862)
• Fix issue with genie download tab loading slow @gblaih (#4863)
• Fix: previous filters deselection upon each 'Select All' click @khaledfahmy123 (#4854)

👷‍♀️ Testing, Configuration & Deployment

• Fix localdb tests on the backend @gblaih (#4853)
• Update screenshots after data change @alisman (#4857)

🧰 Maintenance

• Update oncokb client after api change @alisman (#4865)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.2...v6.0.3
• Frontend: v6.0.2...v6.0.3

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.2

🐛 Bug Fixes

• Fix bar plot changing color when a control is clicked @gblaih (#4845)
• Add configuration for disabling study tag fetching (default to true) @alisman (#4848)

🧰 Maintenance

• Update api clients @alisman (#4850)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.1...v6.0.2
• Frontend: v6.0.1...v6.0.2

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.1

🐛 Bug Fixes

• add structural variant column @uklineale (#4832)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v6.0.0...v6.0.1
• Frontend: v6.0.0...v6.0.1

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v6.0.0

🧬 Features

• Mutational signature plot with cosmic reference signature @TJMKuijpers (#4771)

✨ Enhancements

• When bookmark url is too long, prompt user to create a virtual study instead @alisman (#4807)
• Update NDex tooltip @inodb (#4828)
• Add user color configuration for oncoprinter @gblaih (#4817)
• Iframe loader should allow fullscreen functionality @alisman (#4801)
• add arrow buttons to tooltip timeline @uklineale (#4808)

🐛 Bug Fixes

• Show p/q-values in boxplots of comparison clinical tab @gblaih (#4842)
• Update mobxpromise and fix circular dependency caused by onResult @alisman (#4836)
• Prevent clicking within a tooltip from triggering row selection @onursumer (#4821)
• Default visibility of p-value above legend SV plot @TJMKuijpers (#4803)
• Update properties to fix cors issue in backend @haynescd (#4819)
• Fix: data type filter set default value for checkbox @TJMKuijpers (#4804)
• Enable study view action buttons earlier @alisman (#4799)

🎨 Style Tweaks

• Change NDEx Tab name @inodb (#4797)

⚙️ Changes to handle external APIs

• Update civic API @leexgh (#4775)

👷‍♀️ Testing, Configuration & Deployment

• Add UUID Dat Support @haynescd (#4837)
• [RFC72] Update frontend for backend Spring Boot @haynescd @JREastonMarks @inodb (#4753)
• Update screenshots after data changes @alisman (#4835)
• Update test for sample selector mutational signature @TJMKuijpers (#4843)
• Remove demo-rfc72 dockerImage from localdb tests @haynescd (#4805)
• Fix path to config_service for dev and dev builds @alisman (#4824)

🧰 Maintenance

• Port MSK CDSI chart configuration to v6.0 @alisman (#4841)
• Update api clients @alisman (#4838)
• Fix updateAPI client generation and update API clients @alisman (#4829)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.10...v5.4.11
• Frontend: v5.4.10...v5.4.11

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.10

✨ Enhancements

• Add button in oncoprint tracks menu that adds toggled tracks @gblaih (#4780)
• Update sample type values to show 'total RNA' or 'total DNA' in Patient view @jagnathan (#4782)

🐛 Bug Fixes

• Fix study view survival chart showing two info icons @gblaih (#4793)

👷‍♀️ Testing, Configuration & Deployment

• Implement Custom Tabs mechanism for Study View @pvannierop (#4776)

👷‍♀️ Testing, Configuration & Deployment

• Update screenshots after Oncokb update @alisman (#4795)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.9...v5.4.10
• Frontend: v5.4.9...v5.4.10

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.9

🧬 Features

• [RFC77] Filter buttons on the landing page study search menu @TJMKuijpers (#4721)
• Add group percentages to oncoprint @alisman (#4756)

✨ Enhancements

• Add user color configuration for oncoprint @gblaih (#4699)
• Change gene add behavior to improve user experience @alisman (#4770)

🐛 Bug Fixes

• Use appropriate genome-nexus url depending on study @kalletlak (#4787)
• Restore asterisks in oncoprint track percentage labels @alisman (#4779)
• Fix for endless loop preventing gene update using modify query interface (after direct load of results of view) @alisman (#4778)

👷‍♀️ Testing, Configuration & Deployment

• Fix spec import that is currently breaking local db test report @alisman (#4781)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.8...v5.4.9
• Frontend: v5.4.8...v5.4.9

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning