Release 1.2.0

What's Changed

• Update frontend and backend dependencies

Full Changelog: 1.1.2...v1.2.0

Release 1.1.2

What's Changed

• docs: fix test pypi install command by @atolopko-czi in #2515
• feat: Add PR Linting by @seve in #2560
• Update license copyright year by @atolopko-czi in #2600
• fix #2608: pin flask requirement to be less than 2.3 by @atarashansky in #2609
• chore: Release version 1.1.2 by @atarashansky in #2611

Full Changelog: 1.1.1...1.1.2

Release 1.1.1

What's Changed

• chore: fix unit tests by @atarashansky in #2562
• docs: updating readme and display version for rebranding by @ashin-czi in #2550
• chore: updating Annotate favicon and logo icon by @ashin-czi in #2556
• feat: annotate command improvements by @atolopko-czi in #2568
• fix: fix static file serving in webpack by @seve in #2574

New Contributors

• @atarashansky made their first contribution in #2562
• @ashin-czi made their first contribution in #2550

Full Changelog: 1.1.0...1.1.1

Release 1.1.0

What's Changed

• add cloud storage support for annotations by @bkmartinjr in #2512
• fix: remove unnecessary postgres req by @MDunitz in #2524
• chore: replace optimize-css-assets-webpack-plugin with css-minimizer-webpack-plugin by @roaga in #2525
• chore(webpack): remove script-ext-html-webpack-plugin by @seve in #2534
• chore: skip failing tests to unblock adding of new features by @atolopko-czi in #2545
• fix embedding selection by @atolopko-czi in #2543
• fix: s3 user annotations by @atolopko-czi in #2541
• fix: update actions/setup-python version by @roaga in #2528
• use fsspec.download for S3 artifacts + additional logging by @ebezzi in #2536
• feat: add cli annotation subcommand by @atolopko-czi in #2539
• fix test by @atolopko-czi in #2549

New Contributors

• @roaga made their first contribution in #2525

Full Changelog: 1.0.1...v1.1.0

Release 1.0.1

What's Changed

Bug Fix

• Fix float16 support [#2379] by @blrnw3 in #2483

Minor Changes

• Update license to 2022. by @maniarathi in #2478
• chore(deps): bump follow-redirects from 1.14.2 to 1.14.8 in /client by @dependabot in #2484
• chore(deps): bump simple-get from 3.1.0 to 3.1.1 in /client by @dependabot in #2489
• chore(deps): bump tmpl from 1.0.4 to 1.0.5 in /client by @dependabot in #2490
• chore(deps): bump axios from 0.21.1 to 0.21.4 in /client by @dependabot in #2491
• chore(deps): bump nanoid from 3.1.25 to 3.3.1 in /client by @dependabot in #2488
• release version 1.0.1 by @seve in #2497

Full Changelog: 1.0.0...1.0.1

Release 1.0.0

Desktop 1.0 Release Notes

• Updated links to documentation
• Fixed a bug with label interactions
• Assorted maintenance

Release 0.19.0

New features

• Python 3.9 support
• The latest gene added appears at the top of the list of genes in Quick Gene Search
• Updated front end package dependencies
• Assorted maintenance

Bug fixes

• Fixed a bug when renaming gene sets

Release 0.18.0

New features

• Introduced CLI parameter --X-approximate-distribution for users to specify the distribution of their data, and override the default heuristic determination
• For categories with the number of labels over the number set by --max-category-items (default 1000), we now include a label that aggregates all labels over the limit instead of truncating the list of labels

Breaking changes

• Removed support for experimental features (--experimental-annotations-ontology, --experimental-annotations-ontology-obo and --experimental-enable-reembedding)

Bug fixes

• Fixed a bug in differential expression calculation by changing the t-test calculation to consistently assume normally distributed data, and to log data when data is not normally distributed based on a heuristic
• Fixed a bug in --max-category-items

Release 0.17.0

This release contains a new major feature: gene sets! A gene set is a list of genes. You will now be able to visualize the mean expression of a gene set and create and edit gene sets from the UI. Check out our user guide under docs for more information and how to get started.

We’ve also improved differential expression functionality. Now when you run differential expression, 2 lists will be created: one list of 50 highly expressed genes in group 1 and one list of 50 highly expressed genes in group 2.

Please note we will be deprecating Safari support with this release. Please use Chrome, Edge, or Firefox for the best experience.

Release 0.16.8

Summary: There were two packages that had major updates that caused incompatibility issues with cellxgene: flatbuffers and Flask. In this release, we have pinned both packages to be below the latest 2.0 versions to avoid these incompatibilities (issue #2197).