ENH: HDF5 testing logs

[nawtrey]

• Add 5 darshan logs, each containing H5D and/or
  H5F data for testing HDF5 data aggregation tools
  in the new Python summary report

Targeted at darshan-hpc/darshan#663, these logs cover various cases that can be used to test some of the HDF5 aggregation.

For confirmation, here are some local prints of the relevant module data:

hdf5_file_opens_only.darshan

File:  hdf5_file_opens_only
Modules:  ['POSIX', 'H5F']

H5F DataFrame: 
   rank  H5F_OPENS  H5F_FLUSHES
0     0          1            0
1     1          1            0
2     2          1            0

hdf5_diagonal_write_1_byte_dxt.darshan

File:  hdf5_diagonal_write_1_byte_dxt
Modules:  ['POSIX', 'H5F', 'H5D', 'DXT_POSIX']

H5F DataFrame: 
   rank  H5F_OPENS  H5F_FLUSHES
0     0          1            0
1     1          1            0
2     2          1            0
3     3          1            0
4     4          1            0
5     5          1            0
6     6          1            0
7     7          1            0
8     8          1            0
9     9          1            0

H5D DataFrame: 
   rank  H5D_OPENS  H5D_FLUSHES  H5D_READS  H5D_WRITES  H5D_BYTES_READ  H5D_BYTES_WRITTEN
0     0          1            0          0           1               0                  1
1     1          1            0          0           1               0                  1
2     2          1            0          0           1               0                  1
3     3          1            0          0           1               0                  1
4     4          1            0          0           1               0                  1
5     5          1            0          0           1               0                  1
6     6          1            0          0           1               0                  1
7     7          1            0          0           1               0                  1
8     8          1            0          0           1               0                  1
9     9          1            0          0           1               0                  1

hdf5_diagonal_write_bytes_range_dxt.darshan

File:  hdf5_diagonal_write_bytes_range_dxt
Modules:  ['POSIX', 'H5F', 'H5D', 'DXT_POSIX']

H5F DataFrame: 
   rank  H5F_OPENS  H5F_FLUSHES
0     0          1            0
1     1          1            0
2     2          1            0
3     3          1            0
4     4          1            0
5     5          1            0
6     6          1            0
7     7          1            0
8     8          1            0
9     9          1            0

H5D DataFrame: 
   rank  H5D_OPENS  H5D_FLUSHES  H5D_READS  H5D_WRITES  H5D_BYTES_READ  H5D_BYTES_WRITTEN
0     0          1            0          0           1               0                 10
1     1          1            0          0           1               0                 20
2     2          1            0          0           1               0                 30
3     3          1            0          0           1               0                 40
4     4          1            0          0           1               0                 50
5     5          1            0          0           1               0                 60
6     6          1            0          0           1               0                 70
7     7          1            0          0           1               0                 80
8     8          1            0          0           1               0                 90
9     9          1            0          0           1               0                100

hdf5_diagonal_write_half_flush_dxt.darshan

File:  hdf5_diagonal_write_half_flush_dxt
Modules:  ['POSIX', 'H5F', 'H5D', 'DXT_POSIX']

H5F DataFrame: 
   rank  H5F_OPENS  H5F_FLUSHES
0     0          1            1
1     1          1            0
2     2          1            1
3     3          1            0
4     4          1            1
5     5          1            0
6     6          1            1
7     7          1            0
8     8          1            1
9     9          1            0

H5D DataFrame: 
   rank  H5D_OPENS  H5D_FLUSHES  H5D_READS  H5D_WRITES  H5D_BYTES_READ  H5D_BYTES_WRITTEN
0     0          1            0          0           1               0                  1
1     1          1            0          0           1               0                  1
2     2          1            0          0           1               0                  1
3     3          1            0          0           1               0                  1
4     4          1            0          0           1               0                  1
5     5          1            0          0           1               0                  1
6     6          1            0          0           1               0                  1
7     7          1            0          0           1               0                  1
8     8          1            0          0           1               0                  1
9     9          1            0          0           1               0                  1

hdf5_diagonal_write_half_ranks_dxt.darshan

File:  hdf5_diagonal_write_half_ranks_dxt
Modules:  ['POSIX', 'H5F', 'H5D', 'DXT_POSIX']

H5F DataFrame: 
   rank  H5F_OPENS  H5F_FLUSHES
0     0          1            0
1     1          1            0
2     2          1            0
3     3          1            0
4     4          1            0
5     5          1            0
6     6          1            0
7     7          1            0
8     8          1            0
9     9          1            0

H5D DataFrame: 
   rank  H5D_OPENS  H5D_FLUSHES  H5D_READS  H5D_WRITES  H5D_BYTES_READ  H5D_BYTES_WRITTEN
0     0          1            0          0           1               0                  1
1     2          1            0          0           1               0                  1
2     4          1            0          0           1               0                  1
3     6          1            0          0           1               0                  1
4     8          1            0          0           1               0                  1

All of the DXT logs have a diagonal IO pattern similar to the logs from gh-22. The heatmap for hdf5_diagonal_write_1_byte_dxt.darshan (only "write") data:

Not super important for HDF5 testing, but for hdf5_diagonal_write_half_ranks_dxt.darshan, you can actually observe a difference between ranks that wrote data out and ranks that didn't in the DXT data:

[tylerjereddy]

LGTM, I checked the logs locally. The detail looks good for reproducing the results in the future, and for expanding when read support becomes available via Python bindings.

[carns]

The logs look great, I just requested a few clarifications in the description so that we can more quickly remember interesting details here when we look back at it later.