Polished formating of some links & others #758
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a.k.a. "Saturday-night fever" incl.: - Made all links to non-literals (except links to other ontologies) - Removed inappropriate quotes around links - All Wikipedia links with https - Fixed property names of some links - Added missing dots after definitions and comments - Fixed a couple of typos
matuskalas
added
the
polishing
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| <oboInOwl:hasDefinition>One or more protein sequences, possibly with associated annotation.</oboInOwl:hasDefinition> | ||
| <oboInOwl:hasExactSynonym>Amino acid sequence</oboInOwl:hasExactSynonym> | ||
| <oboInOwl:hasExactSynonym>Amino acid sequences</oboInOwl:hasExactSynonym> | ||
| <oboInOwl:hasExactSynonym>Protein sequences</oboInOwl:hasExactSynonym> | ||
| <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/edam#data"/> | ||
| <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/edam#edam"/> | ||
| <rdfs:label>Protein sequence</rdfs:label> | ||
| <rdfs:seeAlso>http://purl.org/biotop/biotop.owl#AminoAcidSequenceInformation</rdfs:seeAlso> | ||
| <rdfs:seeAlso rdf:resource="http://purl.org/biotop/biotop.owl#AminoAcidSequenceInformation"/> |
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Following the temporary "rule" that links to other ontologies stay as literals, this line should be reverted.
| <oboInOwl:hasDefinition>Reference-based compression of alignment format</oboInOwl:hasDefinition> | ||
| <documentation rdf:resource="http://www.ebi.ac.uk/ena/software/cram-usage#format_specification"/> | ||
| <documentation rdf:resource="http://samtools.github.io/hts-specs/CRAMv2.1.pdf"/> | ||
| <documentation rdf:resource="http://www.ebi.ac.uk/ena/software/cram-usage#format_specification"/> |
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Duplicated lines here
| <oboInOwl:hasExactSynonym>LaTeX format</oboInOwl:hasExactSynonym> | ||
| <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/edam#edam"/> | ||
| <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/edam#formats"/> | ||
| <rdfs:comment>uses the TeX typesetting program format</rdfs:comment> | ||
| <rdfs:comment>Uses the TeX typesetting program format.</rdfs:comment> |
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Check if there are any other defs or comments starting without a capital
| @@ -59882,7 +59889,6 @@ ows re-sequencing of complete genomes of any given organism with high resolution | |||
| <owl:Class rdf:about="http://edamontology.org/topic_3674"> | |||
| <rdfs:subClassOf rdf:resource="http://edamontology.org/topic_3656"/> | |||
| <created_in>1.12</created_in> | |||
| <documentation rdf:resource="https://en.wikipedia.org/wiki/Whole_genome_sequencing"/> | |||
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Double-check that these last ones are there as seeAlso (not visible in diff)
| @@ -54806,7 +54813,7 @@ ows re-sequencing of complete genomes of any given organism with high resolution | |||
| <obsolete_since>1.3</obsolete_since> | |||
| <oldParent rdf:resource="http://www.w3.org/2002/07/owl#Thing"/> | |||
| <oboInOwl:consider rdf:resource="http://edamontology.org/topic_3307"/> | |||
| <oboInOwl:hasDefinition>Theoretical biology</oboInOwl:hasDefinition> | |||
| <oboInOwl:hasDefinition>Theoretical biology.</oboInOwl:hasDefinition> | |||
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This kind of "fake" definitions should be prioritised for improving. Heuristics by length < e.g. 42 chars?
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Regex search
<oboInOwl:hasDefinition>.{0,41}</oboInOwl:hasDefinition>has unfortunately 488 matches 😥 -
<oboInOwl:hasDefinition>.{0,35}</oboInOwl:hasDefinition>still 311 😓 -
<oboInOwl:hasDefinition>.{0,31}</oboInOwl:hasDefinition>209 😰 -
and even
<oboInOwl:hasDefinition>.{0,23}</oboInOwl:hasDefinition>has 62 matches 😭
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I found some things I want to improve (noted in the diff), so turned to Draft PR for now... TODO: Right after this is merged, create _unstable, incl. CSV/TSV. For WikiData. |
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I'm going to fix a few more things here, especially distinguishing the links to other ontologies somehow in a nicer way. |
a.k.a. "Saturday-night fever"
incl.: