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21 Open 53 Closed
21 Open 53 Closed
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Issues list

verify stage name length
#173 opened Oct 18, 2021 by epruesse
allow copying out built-in stages
#172 opened Sep 17, 2021 by epruesse
Environments install with outdated spec file if env desc changed
#171 opened Sep 14, 2021 by epruesse
Don't override dict/list with none in config
#170 opened Sep 14, 2021 by epruesse
Show path in missing path resource exception
#169 opened Sep 14, 2021 by epruesse
Replace "ALL" with project name
#156 opened Apr 26, 2021 by epruesse
Get rid of all_targets.stamp
#150 opened Mar 25, 2021 by epruesse
Ensure that id columns do not contain bad characters
#145 opened Jan 21, 2021 by epruesse
Allow overriding built-in stages
#124 opened Sep 10, 2020 by epruesse
Build stage in normalized location
#73 opened Jun 27, 2018 by epruesse v.0.3.0
1
Add Kallisto / Salmon stage
#65 opened Jun 4, 2018 by epruesse v1.0.0 - feature complete
support singularity enhancement
#55 opened Apr 11, 2018 by epruesse future
Add SRA downloading test case CI
#52 opened Apr 6, 2018 by epruesse v1.0.0 - feature complete
docs: highlight {: :} with pygments docs nice to have
#37 opened Feb 26, 2018 by epruesse future
show localrules flag in docs docs
#36 opened Feb 26, 2018 by epruesse future
show ruleorder in docs docs
#35 opened Feb 26, 2018 by epruesse v1.0.0 - feature complete
Validate and document config YAML CI docs
#32 opened Feb 21, 2018 by epruesse v.0.3.0
Implement "csv" string expansion enhancement
#29 opened Feb 5, 2018 by epruesse future
Add MultiQC for multiple processing stages stage
#28 opened Feb 5, 2018 by epruesse v.0.3.0
Improve resource (mem) handling enhancement
#26 opened Feb 5, 2018 by epruesse
9 tasks
v1.0.0 - feature complete
Add RNA-Seq test case and tests CI
#25 opened Feb 5, 2018 by epruesse v.0.3.0
ProTip! no:milestone will show everything without a milestone.