- I work as Academic Staff Member at Bioinformatics, Institute for Biochemistry and Biology at Universtat Potsdam(UP) and Group 🇩🇪
- I work at the interface of both academics as well as developing applications from client side rendering.
- You can contact me at gaurav.sablok@uni-potsdam.de
- If you want to contact me on Gmail, you can use gauravcodepro@gmail.com
- Communicative, approachable, motivated, task and solution oriented, time responsive, and initiative taker.
- I am very pro-active in making communication and upskilling on emerging trends.
- Proficient in developing new approaches for code development.
- Prefer office space work but also open to remote work 1-2 days.
- Active time and project based approaches and solving limitations.
- Voracious reader of language model implementations language-models
- Curriculum vitae here: Covering Letter Curriculum Vitae, Scopus, ORCID, and Web of Science
- Employers references Previous Employers.
- Open to collaboration on Bioinformatics, Deep Learning, Generative AI, and DevOPs.
- genomes, transcriptomes, organelle, metagenomes and metatranscriptomes, phylogenomes.
- plant, bacterial and fungal.
- Illumina, PacBio, Oxford Nanopore, PacBioHifi, HiC
- Python, R, Ruby, Awk, Shell, Scala, Nushell, Nextflow, Snakemake, MATLAB
- PyTorch, Tensorflow, CatBoost, XGBoost, Sklearn, Keras, LightGBM and other deep learning libraries.
- Python, R, MATLAB, learning Julia, learning graphsAPI
- Git,Docker,Kubernetes, Terraform for container orchestration.
- Shell, NuShell, Awk, Ruby, Python
- GitKraken and Tower for code management.
- PBS and SLURM as job scheduler
- Application deployment using Heroku
- Docker Docker applications
- Ruby on Rails, Streamlit, Shiny, Django, BootStrap, Julia, HTML, Javascript
- Markdown, ReadTheDocs, MkDocs, Jekyll, GitBook, jinja and jinja2, jq, yq
| Name | Description | URL |
|---|---|---|
| streamlit-pacbiohifi | pacbiohifi sequencing information | streamlit-pacbiohifi |
| streamlit-Univeristat-Potsdam | web application for Universitat Potsdam | slurm-applicator |
Ruby gems, Ruby app and Ruby Community: released and development version
| Name | Description | URL |
|---|---|---|
| devopsutils | a devops system configuration gem | devops_system_profiler |
| ruby_template_creator | a ruby templating gem creator | ruby template creator |
| fasta_tokenizer | a fasta tokenizer generator and motif indexer | fasta_tokenizer |
| panacheextract | snps specific information for panache | panacheextract |
| fluxmodels | implementation of flux models | fluxmodels |
| protalign | protein alignment gem for the genome annotation | protein-alignment-gem and proteinmultialign |
| pacbiohifi-analyzer | analyzing pacbio hifi data from reads to graphs | pacbiohifi-analyzer |
Python Packages and Python Community: building development release version
| Name | Description | URL |
|---|---|---|
| tairaccession | python package for interacting with tair | tairaccession |
| graphanalyzer | python package for graph alignment tools | graphanalyzer |
| rnaprocessor | python package for sequence based machine learning | rnaprocessor |
| protein-annotator | python package for genome-protein alignments | protein-annotator |
| ontologyanalyzer | python package ontologies using the semantic web | ontologyanalyzer |
R package and Bioconductor and Posit community: building development release version
| Nname | Description | URL |
|---|---|---|
| evoseq | genome annotation visualization, phylogeny from protein to genome alignments | evoseq, subfunction genomevisual |