Pinned

1. intronIC intronIC Public

   Retrieve annotated intron sequences and classify them as minor (U12-type) or major (U2-type) using a support vector-machine model.

   Python 6

2. jgi-query jgi-query Public

   A simple command-line tool to download data from Joint Genome Institute databases

   Python 46 17

3. cdseq cdseq Public

   Extract coding sequence(s) from a genome and annotation file

   Python 1

4. palign palign Public

   Parallelized sequence alignment using BLAST or DIAMOND

   Python 2

5. reciprologs reciprologs Public

   Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.

   Python 11 4

6. fasterq_dump fasterq_dump Public

   A (faster) wrapper for NCBI's fastq-dump with some convenience functions

   Python 3