pyMultiOmics is a Python package for multi-omics data integration and analysis. It uses the Reactome database to map entities (genes, transcripts, proteins, compounds) to their reactions and pathways. The results is then shown as a network graph. Various analyses such as differential analysis, pathway activity analysis can be performed on this network graph, with the results overlaid on the graph.
Simply run:
pip install pyMultiOmics
For PDF report generation using nbconvert, make sure to install the required dependencies:
https://nbconvert.readthedocs.io/en/latest/install.html
Notebooks to demonstrate various functionalities can be found here.