Should be updated whenever a new script is added ore removed from the directory and whenever a script is used in a new lims step.
Scripts to be run from LIMS.
| Script | Step | Comment |
|---|---|---|
| aliquot_covaris_microbial.py | CG002 - Normalization of microbial samples | |
| aliquot_for_lib_pool.py | G002 - Aliquot Samples for Library Pooling | |
| aliquot_sequencing_microbial.py | CG002 - Normalization of microbial samples for sequencing | |
| amount2qc.py | CG002 - Quantit QC (DNA) | |
| art_hist.py | Helper script, used by other EPPS | |
| bcl2fastq.py | CG002 - Bcl Conversion & Demultiplexing (Illumina SBS) | |
| calculate_amount.py | CG002 - Qubit QC (DNA) | |
| CG002 - Qubit QC (Library Validation) | ||
| calc_vol.py | CG002 - Aliquot Samples for Covaris | |
| copy_field_samp2art.py | CG002 - Aliquot Samples for Library Pooling | |
| copy_orig_well_art2samp.py | CG002 - Reception Control | |
| copy_process_UDF_to_arts.py | CG002 - Library Normalization (HiSeq X) | |
| copy_UDFs_between_WFs.py | CG002 - Plate Setup MAF | |
| copyUDFs_from_aggregateQC_or_other.py | CG002 - Aliquot Samples for Library Pooling | |
| copyUDFs_from_aggregateQC.py | G002 - Aliquot Samples for Library Pooling | |
| CG002 - Library Normalization (HiSeq X) | ||
| demultiplexdata2qc.py | CG002 - Bcl Conversion & Demultiplexing (Illumina SBS) | |
| file2udf_quantit_qc.py | CG002 - Quantit QC (DNA) | |
| CG002 - Quantit QC (normalization) | ||
| CG002 - Quantit QC (Library Validation) | ||
| get_average_size.py | CG002 - Tapestation Microbial QC | |
| get_EB_vol.py | CG002 - Aliquot Libraries for Hybridization (SS XT) | |
| get_missing_reads.py | CG002 - Sequence Aggregation | |
| help_get_stuff.py | silly development helper | |
| LibNorm_calc_vol.py | CG002 - Library Normalization (HiSeq X) | |
| MAF_calc_vol.py | CG002 - Plate Setup MAF | |
| make_bravo_csv.py | CG002 - Normalization of microbial samples | |
| CG002 - Normalization of microbial samples for sequencing | ||
| make_MAF_sample_table.py | CG002 - Plate Setup MAF | |
| make_placement_map.py | CG002 - Aliquot Samples for Covaris | |
| CG002 - Plate Setup MAF | ||
| CG002 - Library Normalization (HiSeq X) | ||
| G002 - Aliquot Samples for Library Pooling | ||
| molar_concentration.py | CG002 - Aggregate QC (Library Validation) | |
| CG002 - Qubit QC RML | ||
| move_samples.py | CG002 - Aggregate QC (Library Validation) | |
| CG002 - Sort HiSeq Samples | ||
| CG002 - Sort HiSeq X Samples (HiSeq X) | ||
| qc2udf_art2samp.py | CG002 - Aggregate QC (DNA) | |
| CG002 - Sequence Aggregation | ||
| CG002 - Sequence Aggregation | ||
| CG002 - Aggregate QC (Library Validation) | ||
| qPCR_dilution.py | CG002 - qPCR QC (Library Validation) | |
| reads_aggregation.py | CG002 - Sequence Aggregation | |
| reads_aggregation_rml.py | CG002 - Sequence Aggregation | |
| prepare_new_samples.py | CG002 - Reception Control | |
| rerun.py | CG002 - Sequence Aggregation | |
| set_qc.py | CG002 - Qubit QC (DNA) | |
| CG002 - Qubit QC (Library Validation) |
reception_control.py
concentration2qc.py
aliquot_for_lib_pool_2_5_nM.py
copy_field_art2samp.py
copy_well_art2samp.py
glsapiutil.py
invoice.py
make_bravo_csv_test.py
make_bravo_normalization_file.py
make_MAF_plate_layout.py
microbial_copyUDFs_from_aggregateQC.py
qPCR_dilution_old.py
reagent-label.py
aliquot_for_lib_pool_no_set_conc.py
set_udf_from_excel.py