Skip to content

The MOLGENIS Software generator tool for creating Dynamic Software Infrastructure used in the Life Sciences

Notifications You must be signed in to change notification settings

mswertz/molgenis-legacy

 
 

Repository files navigation

MOLGENIS

MOLGENIS is an collaborative open source project on a mission to generate great software infrastructure for life science research. Each app in the MOLGENIS family comes with rich data management interface and plug-in integration of analysis tools in R, Java and web services.

Developing your own

Generate generate your own in three steps:

  1. Clone the MOLGENIS generator and an empty distro

    git clone https://www.github.com/molgenis/molgenis.git git clone https://www.github.com/molgenis/molgenis_distro.git cd molgenis_distro

  2. Model what you want for your experiment in a simple XML file example db, example ui

    molgenis.properties molgenis_db.xml molgenis_ui.xml

  3. Run the MOLGENIS generator, after that you're able to use your web application.

MOLGENIS applications

Many molgenis applications have been developed, a not so short overview:

  • xQTL Workbench for multi-level QTL mapping (project)
  • Dystrophic Epidermolysis Bullosa (deb-central) mutation database (project, publication)
  • eXtensible Genotype and Phenotype database (XGAP) (project, publication)
  • Design of Genetical Genomics Experiments (designGG)] (project, publication)
  • BBMRI-NL biobank catalague (project)
  • MAGE-TAB microarray gene experiment object model (MAGETAB-OM)] (project, demo)
  • Pheno-OM Phenotype observation model (project, demo)
  • Mouse Resource Browser (MRB) project] (project, publication)
  • MOLGENIS as data wrapper in Taverna (publication)
  • Animal observation database (AnimalDB) (project)
  • Nordic GWAS control database (project, publication)
  • GWAS Central curation tool (project)
  • Finnish disease database (FINDIS) (project)
  • Bacterial microarrays database (MOLGEN-IS) (publication)
  • Human Metabolic Pathway Database (project, publication)

If you think your project should be listed (differently) please let us know

About

The MOLGENIS Software generator tool for creating Dynamic Software Infrastructure used in the Life Sciences

Resources

Stars

Watchers

Forks

Packages

No packages published