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20 Open 114 Closed
20 Open 114 Closed
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Issues list

Support multiple participant ID columns in tabular data flag:discuss Flag issue that needs to be discussed before it can be implemented.
#286 opened Mar 26, 2024 by alyssadai
1
Investigate bids2table as more performant alternative to pybids _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again phase:research involves researching information on a topic rather than implementing specific feature.
#282 opened Mar 18, 2024 by alyssadai
1
[DOC] Tell user which of the steps comes first feedback:feature request Request for a new functionality or for an enhancement. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again quick fix Minimal planning and/or implementation work required.
#279 opened Feb 28, 2024 by surchs
1 task done
1
Pick better name for custom session created when no session level exists feat:improve Incremental, user facing improvements of an existing feature. someday Not a priority right now, but we want to keep this around to think or discuss more. type:feature Effort to deliver new features, feature changes & improvements
#262 opened Dec 19, 2023 by alyssadai
1
Raise warning about columns in TSV that have not been annotated feat:improve Incremental, user facing improvements of an existing feature. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again type:feature Effort to deliver new features, feature changes & improvements
#240 opened Dec 7, 2023 by alyssadai
1
Note case-sensitivity of participant IDs in error message of bagel bids IDs check documentation Changes only affect the documentation _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again good first issue Good issue for a new contributor.
#230 opened Nov 3, 2023 by alyssadai
2
Shorten tracebacks for errors _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again maint:usability General improvements to product usability that are unrelated to feature prioritization. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#218 opened Sep 26, 2023 by alyssadai
1 task
2
Add progress bar for bagel bids feat:improve Incremental, user facing improvements of an existing feature. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again type:feature Effort to deliver new features, feature changes & improvements
#189 opened Aug 26, 2023 by alyssadai
2
Migration to pydantic v2 flag:discuss Flag issue that needs to be discussed before it can be implemented. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again importance:medium We will address this but will delay for higher priority items. maint:dependency Dependency updates and their version upgrades. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#180 opened Jul 21, 2023 by alyssadai
2 tasks
4
Refactor get_session_path() BIDS util to rely only on BIDS Layout _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again good first issue Good issue for a new contributor. importance:low We are not actively pursuing this item, it may be addressed when there is extra capacity. maint:refactor Simplifying or restructuring existing code or documentation. PR welcome Issue that is not an internal priority, but external PRs to address it are welcome. quick fix Minimal planning and/or implementation work required. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#171 opened Jun 19, 2023 by alyssadai
3
Make ValueError raised when jsonschema validation fails more informative feat:improve Incremental, user facing improvements of an existing feature. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again type:feature Effort to deliver new features, feature changes & improvements
#167 opened Jun 16, 2023 by alyssadai
2
Refactor the tests to be clearer and better differentiated between integration and unit flag:discuss Flag issue that needs to be discussed before it can be implemented. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again maint:coverage Test coverage improvements that were not included in feature prioritization maint:refactor Simplifying or restructuring existing code or documentation. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#164 opened Jun 15, 2023 by surchs
2
[ENH] Use logging and let the user reduce the verbosity feedback:feature request Request for a new functionality or for an enhancement. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again
#162 opened Jun 15, 2023 by surchs
1 task done
3
[BUG] Data dictionary model allows for a continuous BIDS column to have categorical Neurobagel annotations _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again type:bug Defects in shipped code and fixes for those defects
#152 opened Jun 10, 2023 by surchs
1 task done
2
autodoc CLI with typer documentation Changes only affect the documentation _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again importance:medium We will address this but will delay for higher priority items. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#145 opened Jun 1, 2023 by Remi-Gau
4
Expand check for unused missing values to all annotated controlled terms feat:add The first minimal viable change that implements a new functionality. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again type:feature Effort to deliver new features, feature changes & improvements
#117 opened Apr 13, 2023 by alyssadai
2
Create example phenotypic inputs for no-session-layer BIDS case _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again good first issue Good issue for a new contributor. maint:coverage Test coverage improvements that were not included in feature prioritization type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#100 opened Mar 15, 2023 by alyssadai
2 tasks
3
Use informative names for examples used in tests _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again importance:medium We will address this but will delay for higher priority items. maint:refactor Simplifying or restructuring existing code or documentation. PR welcome Issue that is not an internal priority, but external PRs to address it are welcome. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#72 opened Feb 16, 2023 by alyssadai
1 of 4 tasks
5
Select either "heuristic" or "transformation" to describe allowed age TermURLs for within- and across-tool consistency _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again importance:low We are not actively pursuing this item, it may be addressed when there is extra capacity. maint:refactor Simplifying or restructuring existing code or documentation. type:maintenance Upkeeping efforts & catch-up corrective improvements that are not Features nor Bugs
#68 opened Feb 14, 2023 by alyssadai
5
Restrict image modalities to those we support documentation Changes only affect the documentation flag:discuss Flag issue that needs to be discussed before it can be implemented. _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again good first issue Good issue for a new contributor. PR welcome Issue that is not an internal priority, but external PRs to address it are welcome.
#3 opened Aug 3, 2022 by surchs
5
ProTip! Find all open issues with in progress development work with linked:pr.