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Missing file in iGenomes #1515
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I'm hitting the same error in mpileup. |
That sounds like some credentials issue with AWS,
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I had the anonymous setting at the time of the error. I am going to try with GRCh38 and see what happens.
EDIT by @maxulysse removed quoted text
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I just finished a run on 'GRCh38' and it went through without this issue. |
@maxulysse thank you, but it didn't work.. |
Most likely cause for this seems some AWS credentials being picked up somehow, can you confirm that there is no Similarly, can you confirm that you don't set any AWS-related environment variables, i.e. If you do this in a setup involving multiple nodes you'd need to make sure it's true on the node where the actual nextflow processes are being run. If you are running in AWS there could be some extra steps needed, but we can wait with those for now, but please let us know if that's the case. |
I ran it with and without AWS credentials, running into the same issue whatsoever. |
Can you try again? |
Tried and worked without aws credentials for GRCh37. Thanks for fixing the S3 file access :) |
Description of the bug
Hi,
I'm trying to run sarek, and I'm getting the following error:
Command used and terminal output
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