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Issues list

Different sample name handling causes issues with merging bug Something isn't working
#1528 opened May 16, 2024 by njspix
WES files provided by ascat author bug Something isn't working
#1526 opened May 16, 2024 by wlyucl 3.5
Mutect2 run only on one intervals file bug Something isn't working
#1525 opened May 16, 2024 by ekushele
1
port CREATE_INTERVALS_BED to nf-core/modules enhancement New feature or request
#1523 opened May 15, 2024 by maxulysse
1
joint_germline error bug Something isn't working
#1520 opened May 10, 2024 by fan040
Sarek test run unable to find docker image bug Something isn't working
#1519 opened May 10, 2024 by C2i-PeterChung
2
Missing file in iGenomes bug Something isn't working
#1515 opened May 8, 2024 by ekushele
9
Giving a user fasta file, but keeping all default fil path bug Something isn't working
#1514 opened May 7, 2024 by Ist4lri
1
Copy-Number Enhancements - Ascat joint calling enhancement New feature or request
#1512 opened May 7, 2024 by maxulysse 3.5
primer trimming enhancement New feature or request
#1511 opened May 7, 2024 by aihualin
1
Copy-Number Enhancements - Ascat penality enhancement New feature or request
#1510 opened May 7, 2024 by seedgeorge 3.5
1
same sample name over multiple patient doest not fail input schema validation bug Something isn't working
#1503 opened May 6, 2024 by maxulysse
1
Region 536904516..536917009 cannot be stored in a tbi index bug Something isn't working
#1500 opened May 5, 2024 by fan040
Error creating symlinks to BWAIndex bug Something isn't working
#1492 opened Apr 30, 2024 by nevinwu
GCP error in v.3.4.1 "Cloud Storage objects are immutable" bug Something isn't working
#1491 opened Apr 29, 2024 by lescai
1
Error handle for sentieon-dedup with non-sentieon aligner bug Something isn't working
#1480 opened Apr 23, 2024 by asp8200
@asp8200
1
mutect2 error with tumor-normal pairs starting from BAM files bug Something isn't working
#1468 opened Apr 17, 2024 by sci-kai
1
Unable to run sarek workflow in AWS health omics bug Something isn't working
#1458 opened Apr 8, 2024 by DimitrisZisis
12
Additional documentation for specifying ext.args for Mutect2 to avoid join mismatch error enhancement New feature or request
#1455 opened Apr 3, 2024 by pulintz-um
vep_cache versions should probably not be integers bug Something isn't working
#1454 opened Apr 2, 2024 by leipzig
@maxulysse
ERROR ~ Error executing process bug Something isn't working
#1453 opened Apr 2, 2024 by javierAPC
2
bwa index can not build bug Something isn't working
#1452 opened Apr 1, 2024 by xiangqing111
Some issues caused an error in the variant_calling step: There are multiple input files for each of the following file names bug Something isn't working
#1451 opened Mar 29, 2024 by hsk6328
add nf-boost enhancement New feature or request
#1450 opened Mar 28, 2024 by maxulysse
2
Sarek possibly supplying the wrong number of args for CONTROLFREEC_ASSESSSIGNIFICANCE? bug Something isn't working
#1449 opened Mar 23, 2024 by SpikyClip
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