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setup.py
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setup.py
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Based on https://github.com/pypa/sampleproject/blob/master/setup.py."""
# To use a consistent encoding
import codecs
import os
# Always prefer setuptools over distutils
from setuptools import setup, find_packages
from setuptools.command.test import test as TestCommand
import sys
# Shortcut for building/publishing to Pypi
if sys.argv[-1] == 'publish':
os.system('python setup.py sdist bdist_wheel upload')
sys.exit()
def parse_reqs(req_path='./requirements.txt'):
"""Recursively parse requirements from nested pip files."""
install_requires = []
with codecs.open(req_path, 'r') as handle:
# remove comments and empty lines
lines = (line.strip() for line in handle
if line.strip() and not line.startswith('#'))
for line in lines:
# check for nested requirements files
if line.startswith('-r'):
# recursively call this function
install_requires += parse_reqs(req_path=line[3:])
else:
# add the line as a new requirement
install_requires.append(line)
return install_requires
# This is a plug-in for setuptools that will invoke py.test
# when you run python setup.py test
class PyTest(TestCommand):
"""Set up the py.test test runner."""
def finalize_options(self):
"""Set options for the command line."""
TestCommand.finalize_options(self)
self.test_args = []
self.test_suite = True
def run_tests(self):
"""Execute the test runner command."""
# Import here, because outside the required eggs aren't loaded yet
import pytest
sys.exit(pytest.main(self.test_args))
# Get the long description from the relevant file
here = os.path.abspath(os.path.dirname(__file__))
with codecs.open(os.path.join(here, 'README.md'), encoding='utf-8') as f:
long_description = f.read()
setup(
name='genotype',
# Versions should comply with PEP440. For a discussion on
# single-sourcing the version across setup.py and the project code,
# see http://packaging.python.org/en/latest/tutorial.html#version
version='2.2.0',
description=("Taboo provides an automated pipipeline for comparing"
"genotypes from different assays."),
long_description=long_description,
# What does your project relate to? Separate with spaces.
keywords='genotype development',
author='Robin Andeer',
author_email='robin.andeer@scilifelab.se',
license='MIT',
# The project's main homepage
url='https://github.com/robinandeer/genotype',
packages=find_packages(exclude=('tests*', 'docs', 'examples')),
# If there are data files included in your packages that need to be
# installed, specify them here.
include_package_data=True,
package_data={
'genotype': [
'server/genotype/templates/genotype/*.html',
]
},
zip_safe=False,
# Although 'package_data' is the preferred approach, in some case you
# may need to place data files outside of your packages.
# In this case, 'data_file' will be installed into:
# '<sys.prefix>/my_data'
# data_files=[('my_data',tr ['data/data_file'])],
# Install requirements loaded from ``requirements.txt``
install_requires=parse_reqs(),
tests_require=[
'pytest',
],
cmdclass=dict(
test=PyTest,
),
# To provide executable scripts, use entry points in preference to the
# "scripts" keyword. Entry points provide cross-platform support and
# allow pip to create the appropriate form of executable for the
# target platform.
entry_points={
'console_scripts': [
'genotype = genotype.cli:root',
],
'genotype.subcommands.2': [
'init = genotype.init.cli:init',
'load = genotype.load.cli:load',
'add-sex = genotype.store.cli:add_sex',
'mip-sex = genotype.store.cli:mip_sex',
'view = genotype.store.cli:view',
'match = genotype.match.cli:match',
'check = genotype.match.cli:check',
'delete = genotype.load.cli:delete',
'serve = genotype.server.cli:serve',
'ls = genotype.store.cli:ls',
'sample = genotype.store.cli:sample',
]
},
# See: http://pypi.python.org/pypi?%3Aaction=list_classifiers
classifiers=[
# How mature is this project? Common values are:
# 3 - Alpha
# 4 - Beta
# 5 - Production/Stable
'Development Status :: 3 - Alpha',
# Indicate who your project is intended for
'Intended Audience :: Developers',
'Topic :: Software Development',
# Pick your license as you wish (should match "license" above)
'License :: OSI Approved :: MIT License',
# Specify the Python versions you support here. In particular, ensure
# that you indicate whether you support Python 2, Python 3 or both.
'Programming Language :: Python :: 2',
'Programming Language :: Python :: 2.7',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.3',
'Programming Language :: Python :: 3.4',
'Environment :: Console',
],
)