Genotype

Manage SNP calling comparisons at Clinical Genomics. The package exposes a CLI and a bare bones web interface to visualize results stored in a SQLite database.

Install

$ conda install -c bioconda pysam pyyaml sqlalchemy flask
$ pip install genotype

Help?

Please check out the documentation

Name		Name	Last commit message	Last commit date
Latest commit History 491 Commits
.configs		.configs
.github		.github
alembic		alembic
artwork		artwork
docs		docs
genotype		genotype
local		local
scripts		scripts
tests		tests
.bumpversion.cfg		.bumpversion.cfg
.coveragerc		.coveragerc
.editorconfig		.editorconfig
.gitignore		.gitignore
.pre-commit-config.yaml		.pre-commit-config.yaml
AUTHORS		AUTHORS
CHANGELOG.md		CHANGELOG.md
CONTRIBUTING.md		CONTRIBUTING.md
DEPLOYMENT.md		DEPLOYMENT.md
Dockerfile		Dockerfile
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
README.md		README.md
application.py		application.py
mkdocs.yml		mkdocs.yml
poetry.lock		poetry.lock
pyproject.toml		pyproject.toml
requirements.txt		requirements.txt

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Clinical-Genomics/genotype

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Genotype

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