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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

Pinned

  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 3

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 6 2

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 226 repositories
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 6 GPL-3.0 2 3 1 Updated May 31, 2024
  • vidarr Public

    Analysis provenance tracking server

    Java 1 MIT 1 0 2 Updated May 31, 2024
  • shesmu Public

    Decision-driven action launching system

    Java 8 MIT 3 0 3 Updated May 31, 2024
  • data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python 0 MIT 0 0 0 Updated May 30, 2024
  • xenoclassify-workflow Public

    workflow to classify short-read sequencing data generated from xenograft samples

    WDL 0 0 0 0 Updated May 30, 2024
  • dimsum Public

    QC Tracking dashboard

    Java 1 0 0 1 Updated May 30, 2024
  • mutect2ConsensusTumorOnly Public

    The Mutect2Consensus workflow with only tumor inputs

    WDL 0 0 0 1 Updated May 30, 2024
  • mutect2Consensus Public

    The Mutect2Consensus workflow will process umiConsensus outputs for the tumour data through mutect2 in tumour only mode to call variants then use information from the matched normal to identify likely germline variants.

    WDL 0 0 0 1 Updated May 30, 2024
  • variantMerging Public

    a workflow for combining variant calls from SNV analyses done with different callers

    Python 0 GPL-2.0 0 0 0 Updated May 29, 2024
  • Dragen-bclconvert Public
    WDL 0 0 0 0 Updated May 29, 2024
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