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@phylo42

Phylo 42

Bioinformatic developments based on the Phylo-kmer idea. Projects are run in the MAB team (Methods and Algorithms for Bioinformatics) of the LIRMM.

Pinned

  1. PEWO PEWO Public

    Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees

    Python 11 9

  2. EPIK EPIK Public

    Alignment-free phylogenetic placement

    C++ 4 1

  3. RAPPAS RAPPAS Public

    Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences

    Java 9 3

  4. sherpas sherpas Public

    Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences

    C++ 8 4

Repositories

Showing 7 of 7 repositories
  • PEWO Public

    Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees

    Python 11 MIT 9 11 1 Updated May 15, 2024
  • IPK Public

    Inference of phylo-k-mers

    C++ 4 MIT 1 9 1 Updated May 7, 2024
  • I2L Public
    C++ 0 0 0 0 Updated May 7, 2024
  • EPIK Public

    Alignment-free phylogenetic placement

    C++ 4 MIT 1 1 1 Updated Feb 8, 2024
  • RAPPAS Public

    Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences

    Java 9 GPL-3.0 3 9 0 Updated Dec 20, 2023
  • PEWO_java Public

    Java tools for PEWO

    Java 0 MIT 1 1 0 Updated Jul 19, 2023
  • sherpas Public

    Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences

    C++ 8 MIT 4 2 0 Updated Jan 12, 2021

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