Use identity and similarity to find nearest germlines

Previously we used number of mutations, which caused long J genes to be discarded even if most of the sequence matched better.

Fix cdr definition error message

v0.3.1

Set version to 0.3.1

Fix IMGT numbering of CDR1 and CDR2

CDR1 position 33 and CDR2 position 61 were are now numbered correctly

Refactor into modules, minor fixes

• Break into multiple modules
• Support passing Chain args in FASTA parsing
• Support getting unique germlines
• Raise error on ANARCI IMGT position 61A bug: oxpig/ANARCI#14

Germline assignment using ANARCI

Assign germlines to v_gene and j_gene fields using assign_germline=True

Fix type hinting

v0.2.5

Set version to 0.2.5

CDR grafting improvements

v0.2.4

Set version to 0.2.4

v0.2.3

Set version to 0.2.3

0.2.3

Set version to 0.2.3

v0.2.1

Set version to 0.2.1