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Fix Mac tests by making an unshallow copy of Homebrew repos
It seems that updating shallow Git clones is expensive, and as a result Homebrew recently started refusing to update shallow clones (see Homebrew/discussions#226). This commit tries to fix the problem by making these repos into full clones before running "brew update". I also came across another error about there being a conflicting version of pip3 in /usr/local. I suspect that is related to the other Python binaries that the script has to delete, so I added pip3 to the list and that seemed to solve the problem.
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