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25 Open 27 Closed
25 Open 27 Closed
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Issues list

get dimensioning from output file in case Atlantis run doesn't finish
#56 opened Oct 25, 2022 by sgaichas
Need to cast as data.table to use dcast in reformat_compositions
#53 opened Oct 1, 2021 by ChristineStawitz-NOAA
@ChristineStawitz-NOAA
reformat load_catch output
#52 opened Jul 28, 2021 by andybeet
DetaileDietCheck.txt contents - load_detailed_diet_comp
#50 opened Jun 25, 2021 by andybeet
create package down site
#46 opened Mar 26, 2021 by andybeet
3
add sample_ages to wrappers to simulate ageing a subset of lengthed fish
#42 opened Oct 29, 2020 by sgaichas
5
Save run_truth output as .rds rather than .Rdata?
#41 opened Sep 17, 2020 by sgaichas
2
Improve robustness across Atlantis models
#38 opened Mar 19, 2020 by sgaichas
1
check birthday for each species when assigning age
#36 opened Jan 16, 2020 by ChristineStawitz-NOAA
stock assessment skill assessment functions
#35 opened Jan 13, 2020 by sgaichas
wrapper functions to generate stock assessment inputs
#34 opened Jan 13, 2020 by sgaichas
2 tasks done
2
add calculate M function
#32 opened May 23, 2019 by sgaichas
1
Add code to write growth parameter initial conditions and bounds based on atlantisom "data"
#30 opened May 22, 2019 by cstawitz
@cstawitz
Add function to write empirical weight-at-age
#29 opened May 22, 2019 by cstawitz
@cstawitz
Standard survey specifications list
#26 opened Dec 15, 2016 by sgaichas
1
calc_Z survival at time step or year
#25 opened Feb 10, 2016 by kellijohnson-NOAA
2
add callgraphs enhancement
#23 opened Dec 11, 2015 by kellijohnson-NOAA
@kellijohnson-NOAA
list all items ever eaten
#22 opened Dec 11, 2015 by kellijohnson-NOAA
2
catch.nc and catch.txt do not add up
#21 opened Dec 11, 2015 by alketh
@alketh
4
function create_env enhancement
#11 opened Dec 6, 2015 by kellijohnson-NOAA
4 tasks
@kellijohnson-NOAA
Finalize package enhancement
#10 opened Dec 6, 2015 by ghost
7 tasks
@slucey
functions sample_ enhancement
#9 opened Dec 6, 2015 by kellijohnson-NOAA
5 tasks
@allanhicks
4
function calc_stage2age enhancement help wanted
#8 opened Dec 6, 2015 by ghost
5 tasks
@gavinfay
3
function create_fisherydata enhancement
#7 opened Dec 6, 2015 by kellijohnson-NOAA
2 of 3 tasks
@allanhicks
2
function calc_pred_diet enhancement
#5 opened Dec 6, 2015 by ghost
1 of 4 tasks
@alketh
5
ProTip! What’s not been updated in a month: updated:<2024-04-25.