-
Notifications
You must be signed in to change notification settings - Fork 241
Issues: samtools/bcftools
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Author
Label
Projects
Milestones
Assignee
Sort
Issues list
Solution to bcftools merge Failed to open *vcf.gz: could not load index
#2205
opened Jun 5, 2024 by
DLCrawford
Genotype Hard Calling- keeping GQ>=20, DP >=10 and 0.2<AB<0.8
#2203
opened Jun 4, 2024 by
sleibovitz
norm remove dupes doesn't handle symbolic and non-symbolic duplicates
#2199
opened May 30, 2024 by
davmlaw
bcftools mpileup + call seemingly confident in allele only present in a few reads?
requires-test-case
#2185
opened May 17, 2024 by
emos8710
"bcftools norm -m -any" prdocues "."
htslib-dependent
Cannot be fixed until htslib is fixed
#2173
opened Apr 29, 2024 by
shahamer
Could bcftools report all states of characters for very low coverage?
#2141
opened Mar 26, 2024 by
Axze-rgb
bcftools reheader Incomplete File if Output Same as Input
enhancement
#2140
opened Mar 26, 2024 by
DarioS
bcftools norm -m +any
gives incorrect AN
value when SNP and INDEL entries are merged
#2137
opened Mar 24, 2024 by
Fan-iX
Incorrect interpretation of fixed ALT homozygotes from bcftools filter?
requires-test-case
#2123
opened Mar 8, 2024 by
pmoizerv
problem changing the ploidy of female individuals on the sex chromosome
requires-test-case
#2122
opened Mar 8, 2024 by
TanguyMuller
Updating filter syntax and threshold ?
documentation
enhancement
#2101
opened Feb 18, 2024 by
davidyuyuan
bcftools-1.19 csq: output is not compatible with previous --local-csq format
#2073
opened Jan 9, 2024 by
mmokrejs
Previous Next
ProTip!
Exclude everything labeled
bug
with -label:bug.