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470 Open 7,094 Closed
470 Open 7,094 Closed
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Issues list

remotes::install_github("satijalab/seurat-data", quiet = TRUE) does not work bug Something isn't working
#8933 opened May 25, 2024 by asmlgkj
RCTD for Xenium data
#8932 opened May 25, 2024 by balthasar0810
Visium image shrunk
#8931 opened May 24, 2024 by weishwu
Warning: Adding a dimensional reduction (integrated.rpca) without the associated assay being present
#8927 opened May 23, 2024 by Flu09
MapQuery for CITE-seq, using a CITE-seq reference
#8925 opened May 23, 2024 by Zarkorix
DoHeatmap donot return plot bug Something isn't working
#8924 opened May 23, 2024 by nhu-github
Error in running IntegrateData()
#8923 opened May 23, 2024 by JieWu2012
Integrating multiple objects with IntegrateEmbeddings() erases all previous reductions bug Something isn't working
#8917 opened May 21, 2024 by hannanw
Error in .rowNamesDF<-(x, value = value) : invalid 'row.names' length
#8916 opened May 21, 2024 by Noralii
SCTransform in a merged and subsetted object how to set variable features
#8915 opened May 21, 2024 by Starlord3796
Combining counts of 2 genes into 1 gene - spatial
#8914 opened May 20, 2024 by LukeJ89
SCTransform fails with error: no applicable method for 'as.sparse' applied to an object of class "c('double', 'numeric')" bug Something isn't working
#8912 opened May 18, 2024 by nigiord
NormalizeData() FindVariableFeatures() ScaleData() RunPCA() extremely slow with large dataset (1M+ cell 100+ samples). bug Something isn't working
#8911 opened May 18, 2024 by Pentayouth
"The following N features requested have not been scaled" warning after running SCTransform bug Something isn't working
#8909 opened May 17, 2024 by wudustan
Problems with RunPCA when npcs > 25 bug Something isn't working
#8908 opened May 17, 2024 by milani31
2
Why are the points in the plots drawn by the SpatialFeaturePlot() function very small? bug Something isn't working
#8906 opened May 17, 2024 by XudongHan-bio
3
FindTransferAnchors and convert gene name
#8901 opened May 16, 2024 by Rayan21100
Issue with memory handling in Seurat v5 bug Something isn't working
#8899 opened May 16, 2024 by wudustan
Error when running scVIIntegration: Error in object[][features, ] : incorrect number of dimensions bug Something isn't working
#8897 opened May 15, 2024 by doreszr
Load Nanostring meta.data doesn't transfer well bug Something isn't working
#8895 opened May 15, 2024 by roanvanscheppingen
1
Bridge integration with spatial transcriptomics as reference
#8894 opened May 15, 2024 by AnnaAntonatouPap
SCTransform regression not allowing Factored variables bug Something isn't working
#8893 opened May 15, 2024 by DKaukonen
Merge and JoinLayers on time-serie dataset
#8892 opened May 15, 2024 by oceaneblard
The Sketch Data function specifies an invalid number of selected cells bug Something isn't working
#8891 opened May 15, 2024 by haolangchen
Variable features in scale.data slot
#8889 opened May 14, 2024 by pshukla63
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