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Syncmers with same minimum #32

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MitraDarja opened this issue Mar 7, 2022 · 0 comments
Open

Syncmers with same minimum #32

MitraDarja opened this issue Mar 7, 2022 · 0 comments
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@MitraDarja
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It is not quite clear, what to do, if the minimum appears multiple times in a submer, what is then the minimum? The first occurrence or all occurrences?
If I understand GetMinSubkmerPos in https://github.com/rcedgar/syncmer/blob/master/kmer.cpp correctly, then only the first occurrence is seen as minimum. Therefore, for an offset of 1 and k=4, s=2 the sequence AAAA would not be a syncmer.

@MitraDarja MitraDarja added the question Further information is requested label Jan 14, 2023
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