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631 Open 992 Closed
631 Open 992 Closed
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Issues list

deprecate --name on sig subcommands 5.0 issues to address for a 5.0 release
#3173 opened May 24, 2024 by ctb
classify plant reads in metagenomes
#3172 opened May 24, 2024 by gabridinosauro
Custom alphabet or moltype? enhancement
#3171 opened May 21, 2024 by olgabot
1
ANI calculation
#3170 opened May 21, 2024 by Amanda-Biocortex
2
Implement a SOCKS interface plugin
#3163 opened May 16, 2024 by luizirber
Application of f_unique_to_query and threshold_bp
#3154 opened May 13, 2024 by Amanda-Biocortex
5
sketch ... --name is not documented in CLI help
#3152 opened May 12, 2024 by mr-eyes
1
detecting and removing microbial contamination from human WGS - info, tutorial, etc.
#3151 opened May 11, 2024 by ctb
add some rust developer docs!
#3150 opened May 10, 2024 by ctb
RocksDB-based RevIndex gather functionality is broken.
#3139 opened May 4, 2024 by ctb
sig overlap and sig subtract should be upgraded to support more than JSON sigs
#3136 opened May 4, 2024 by ctb
1
sourmash compare runs out of memory on large comparisons
#3134 opened Apr 30, 2024 by yuzie0314
10
maturin build is failing on latest for maturin wheels, arch ppc64le
#3125 opened Apr 22, 2024 by ctb
2
add sig grep -l to just print out the names of matches
#3120 opened Apr 18, 2024 by ctb
doco: GTDB R207 database inconsistency
#3118 opened Apr 16, 2024 by wwood
3
does --relpath in sourmash sig manifest etc. convert abspaths into relpaths?
#3115 opened Apr 13, 2024 by ctb
pursue spack release PR for sourmash 4.8.4 and beyond
#3113 opened Apr 10, 2024 by ctb
add conda-forge & sourmash-minimal into release checklist
#3112 opened Apr 10, 2024 by ctb
update authorship for zenodo integration?
#3111 opened Apr 9, 2024 by bluegenes
1
Index.select allows ksizes that aren't an integer.
#3107 opened Apr 6, 2024 by ctb
using fastmultigather to do contig-level gather and taxonomy assignment - a brief tutorial doc documentation content or issues faq things to add to an FAQ or docs
#3095 opened Mar 22, 2024 by ctb
2
searching database for any duplicates genomes
#3094 opened Mar 21, 2024 by SAMtoBAM
3
automatic upload to zenodo is not working
#3093 opened Mar 21, 2024 by ctb
wheel upload to github releases no longer seems to work as of v4.8.7
#3092 opened Mar 21, 2024 by ctb
revisit cibuildwheel configuration for 2.17.0
#3091 opened Mar 21, 2024 by ctb
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