cram
Here are 23 public repositories matching this topic...
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
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Jun 5, 2024 - Nextflow
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
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May 21, 2024 - mupad
Rust software for solving impartial games.
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May 20, 2024 - Rust
Functional tests for command line applications
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Jun 1, 2024 - Python
A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
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Jun 5, 2024 - Nextflow
Using ChatGPT & GPT-4 to generate CRAM & PyCRAM designators in a one-shot fashion
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Apr 22, 2024 - Python
Tool for adding genomic variants to an existing genome (in SAM/BAM/CRAM format). Currently supported variants are SNVs, indels and SVs (insertions, deletions, translocations, inversions and duplications). It generates realistic genomes as almost always less than 99% of the original real genome is modified.
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Apr 18, 2024 - Python
Fast and accurate sequence demultiplexing
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Mar 26, 2024 - C++
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
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Dec 12, 2023 - Python
Convert output from Cram (and some other tools) to TAP (Test Anything Protocol)
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Mar 8, 2023 - Python
cram is a computational room acoustics module to simulate and explore various acoustic properties of a modeled space
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Feb 28, 2023 - TypeScript
basepair bio: a single binary with many useful genomics subtools.
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Jul 3, 2019 - Nim
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