cutadapt

Here are 7 public repositories matching this topic...

digo4 / Clinical-Genomics

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

picard samtools bwa-mem varscan bcftools bowtie2 trimgalore cutadapt fastqc freebayes fastp gatk4 trimmomatic gatk-bestpractices gatk-joint-variant-calling-workflow gatk-cnv gatk4-haplotypecaller

Updated Jan 17, 2024
Shell

y9c / cutseq

Sponsor

Star

✂️ Trim sequencing adapters from NGS data automatically

adapter bioinformatics rna-seq ngs barcode umi dna-seq cutadapt

Updated May 26, 2024
Python

Pinky-cloud224 / snakemake_workflow_rna_seq_data_analysis

Star

config rna-seq jupyter-notebook conda python3 multiqc tpm salmon kallisto featurecounts paired-end fastq-files cutadapt fastqc htseq-count snakemake-workflow

Updated Oct 20, 2022
Jupyter Notebook

hisplan / docker-cutadapt

Star

Dockerized cutadapt

docker cutadapt

Updated Aug 4, 2021
Shell

DavideScarpetta / taxonomic_profiling

Star

Metabarcoding analysis pipeline, using DADA2 and qiime2

bioinformatics bioinformatics-pipeline metabarcoding dada2 cutadapt qiime2 taxonomic-profiling metabarcoding-data

Updated Jan 9, 2024
Shell

GenomicaMicrob / pair-end_cleaner

Star

Script to unzip, clean, assemble, and convert illumina pair-end fastq files in all subdirectories for 16S amplicon data (V3, V4 and V3-V4 regions).

metagenomics illumina 16s fastq-files cutadapt pair-end

Updated Dec 13, 2018

cyverseuk / cutadapt

Star

dockerfile bioinformatics hpc cyverseuk agaveapi hpc-applications cutadapt

Updated May 8, 2017
Shell

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cutadapt

Here are 7 public repositories matching this topic...

digo4 / Clinical-Genomics

y9c / cutseq

Pinky-cloud224 / snakemake_workflow_rna_seq_data_analysis

hisplan / docker-cutadapt

DavideScarpetta / taxonomic_profiling

GenomicaMicrob / pair-end_cleaner

cyverseuk / cutadapt

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