divide blast query and run all chunks across HPC or localhost in parallelly
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Updated
May 23, 2024 - Python
divide blast query and run all chunks across HPC or localhost in parallelly
🚀 R package: future: Unified Parallel and Distributed Processing in R for Everyone
Dasandata's Open HPC Cluster Recipes & Document.
An open-source toolkit for deploying and managing high performance clusters for HPC, AI, and data analytics workloads.
A Slurm-based HPC workload management environment, driven by Ansible.
OAR: versatile resource and job manager for cluster (third generation)
Cloyster HPC is a turnkey HPC cluster solution with an user-friendly installer
PMIx Reference RunTime Environment (PRRTE)
In this research project a standardised AlphaFold 2-based molecular replacement strategy is developed and implemented in an existing biomolecule structure solution pipeline at MAX IV Laboratory. It can be run on high performance clusters similar to the LUNARC (https://www.lunarc.lu.se/). A standalone and implemented version of the pipeline exists.
bash shell utilities for analyzing csv files and writing the slurm and pbs applications.
Slurm HPC node status page
🚀 R package: future.apply - Apply Function to Elements in Parallel using Futures
Pavilion is a Python 3 (3.5+) based framework for running and analyzing tests targeting HPC systems.
Prometheus exporter for the stats in the cgroup accounting with slurm. This will also collect stats of a job using NVIDIA GPUs.
IGB Cluster Easybuild Easyconfigs
pip install the deep learning & HPC starter pack to begin your project.
🧰 Toolkit for creating virtual clusters with public cloud resources
A dracut module for creating partitions for containerd and kubelet.
slurm-docker-integration provides HPC-Kubernetes integration artifacts
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