Mutation table of COVID-19 virus genome with all possible substitution mutations and corresponding 20-mers for mutation identification
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Updated
Apr 21, 2022 - Python
Mutation table of COVID-19 virus genome with all possible substitution mutations and corresponding 20-mers for mutation identification
Files from DIMACS 2007 DNA barcoding challenge
K-mer spectrum corrector based on Hadoop
A simple python script that counts k-mer matches between reference database and query .fasta files, optionally returning all non-matching query sequences. Designed originally for sequencing adapter decontamination.
A fork of the original https://github.com/medvedevgroup/UST tool.
K-mer search enabled fast bacterial DNA sequence retrieval with DNA sequence analysis of Pittsburgh rivers.
Probabilistic genome assembler based on de Bruijn Graph and profile HMM
An easy way to visualize protein k-mer signature
A method for creating a dictionary of all k-mer abundances within a fasta file along with their corresponding Godel numbers.
A read classification tool based on Interleaved Bloom Filters
Telomeric Repeat motif Identification tool with Short-read sequencing
A PHP hash table optimized for counting short gene sequences for use in Bioinformatics.
Comparison between different methods to simplify sequence data
This hackathon project aims to use a Convolutional Neural Network (CNN) to accurately identify promoter classes for DNA sequencing, leveraging spatial pattern recognition to enhance genetic analysis.
simple desktop app that apply some of DNA searching algorithms, with easy use desktop GUI using Pyqt6 lib in python.
🧹 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
subset and spaced seed design tool
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