Judy-generator tool experiment for master-thesis
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Updated
Nov 10, 2017 - Python
Judy-generator tool experiment for master-thesis
A simple GUI that allows users to check whether mutations from a SARS-CoV-2 genome best fit a mutational distribution of genomes derived from global, chronic, or deer infections.
Experimental Evaluation and Comparison of Java Mutation Tools
Analyzing TCGA cohorts and multiomic data in R
Automated analysis tool for mutations in promoters, transcription factor binding sites, coding regions and protein domains in the context of gene regulatory networks.
BAMdelbee is a novel tool for discovering homozygous deletions in Whole-exome-sequencing (WES) and whole-genome-sequencing (WGS) data. WES or WGS samples generated by the same method produce BAM files with similar alignment coverage across the genome. BAMdelbee locates homozygous deletions by pinpointing regions covered in all samples but the on…
things behind nectarmutation.org
Multi-class classifier for DNA genetic mutations.
Student plagiarism detection tool based on CCD algorithms
Reports frequency of all single nucleotide changes for a group of fastq files
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
Next-gen Sequencing analysis tools
Genomic surveillance for Dengue peruvian outbreaks
Projects that use mutation testing, based on mutation operators applied at the level of a statement within a method or a function. The mutated program needs to be strongly killed by the designed test cases. At least three different mutation operators should be used.
MEMDS (Mutation Enrichment followed by upscaled Maximum Depth Sequencing) protocol output analysis pipeline
WOLAND is a multiplatform tool to analyze point mutation patterns using resequencing data from any organism or cell. It is implemented as a Perl and R tool using as inputs filtered unannotated or annotated SNV lists, combined with its correspondent genome sequences.
Mutation Detection in Lung Cancer Cell Lines using CNNs
Term project for the Computational Biology (ENS210) course in Sabancı University.
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